Merge remote-tracking branch 'public-gh/master' into paperclip-company-import-export

* public-gh/master:
  fix: address greptile follow-up feedback
  docs: clarify quickstart npx usage
  Add guarded dev restart handling
  Fix PAP-576 settings toggles and transcript default
  Add username log censor setting
  fix: use standard toggle component for permission controls

# Conflicts:
#	server/src/routes/agents.ts
#	ui/src/pages/AgentDetail.tsx

ui/src/components/DevRestartBanner.tsx

@@ -0,0 +1,89 @@
+import { AlertTriangle, RotateCcw, TimerReset } from "lucide-react";
+import type { DevServerHealthStatus } from "../api/health";
+
+function formatRelativeTimestamp(value: string | null): string | null {
+  if (!value) return null;
+  const timestamp = new Date(value).getTime();
+  if (Number.isNaN(timestamp)) return null;
+
+  const deltaMs = Date.now() - timestamp;
+  if (deltaMs < 60_000) return "just now";
+  const deltaMinutes = Math.round(deltaMs / 60_000);
+  if (deltaMinutes < 60) return `${deltaMinutes}m ago`;
+  const deltaHours = Math.round(deltaMinutes / 60);
+  if (deltaHours < 24) return `${deltaHours}h ago`;
+  const deltaDays = Math.round(deltaHours / 24);
+  return `${deltaDays}d ago`;
+}
+
+function describeReason(devServer: DevServerHealthStatus): string {
+  if (devServer.reason === "backend_changes_and_pending_migrations") {
+    return "backend files changed and migrations are pending";
+  }
+  if (devServer.reason === "pending_migrations") {
+    return "pending migrations need a fresh boot";
+  }
+  return "backend files changed since this server booted";
+}
+
+export function DevRestartBanner({ devServer }: { devServer?: DevServerHealthStatus }) {
+  if (!devServer?.enabled || !devServer.restartRequired) return null;
+
+  const changedAt = formatRelativeTimestamp(devServer.lastChangedAt);
+  const sample = devServer.changedPathsSample.slice(0, 3);
+
+  return (
+    <div className="border-b border-amber-300/60 bg-amber-50 text-amber-950 dark:border-amber-500/25 dark:bg-amber-500/10 dark:text-amber-100">
+      <div className="flex flex-col gap-3 px-3 py-2.5 md:flex-row md:items-center md:justify-between">
+        <div className="min-w-0">
+          <div className="flex items-center gap-2 text-[12px] font-semibold uppercase tracking-[0.18em]">
+            <AlertTriangle className="h-3.5 w-3.5 shrink-0" />
+            <span>Restart Required</span>
+            {devServer.autoRestartEnabled ? (
+              <span className="rounded-full bg-amber-900/10 px-2 py-0.5 text-[10px] tracking-[0.14em] dark:bg-amber-100/10">
+                Auto-Restart On
+              </span>
+            ) : null}
+          </div>
+          <p className="mt-1 text-sm">
+            {describeReason(devServer)}
+            {changedAt ? ` · updated ${changedAt}` : ""}
+          </p>
+          <div className="mt-2 flex flex-wrap items-center gap-2 text-xs text-amber-900/80 dark:text-amber-100/75">
+            {sample.length > 0 ? (
+              <span>
+                Changed: {sample.join(", ")}
+                {devServer.changedPathCount > sample.length ? ` +${devServer.changedPathCount - sample.length} more` : ""}
+              </span>
+            ) : null}
+            {devServer.pendingMigrations.length > 0 ? (
+              <span>
+                Pending migrations: {devServer.pendingMigrations.slice(0, 2).join(", ")}
+                {devServer.pendingMigrations.length > 2 ? ` +${devServer.pendingMigrations.length - 2} more` : ""}
+              </span>
+            ) : null}
+          </div>
+        </div>
+
+        <div className="flex shrink-0 items-center gap-2 text-xs font-medium">
+          {devServer.waitingForIdle ? (
+            <div className="inline-flex items-center gap-2 rounded-full bg-amber-900/10 px-3 py-1.5 dark:bg-amber-100/10">
+              <TimerReset className="h-3.5 w-3.5" />
+              <span>Waiting for {devServer.activeRunCount} live run{devServer.activeRunCount === 1 ? "" : "s"} to finish</span>
+            </div>
+          ) : devServer.autoRestartEnabled ? (
+            <div className="inline-flex items-center gap-2 rounded-full bg-amber-900/10 px-3 py-1.5 dark:bg-amber-100/10">
+              <RotateCcw className="h-3.5 w-3.5" />
+              <span>Auto-restart will trigger when the instance is idle</span>
+            </div>
+          ) : (
+            <div className="inline-flex items-center gap-2 rounded-full bg-amber-900/10 px-3 py-1.5 dark:bg-amber-100/10">
+              <RotateCcw className="h-3.5 w-3.5" />
+              <span>Restart <code>pnpm dev:once</code> after the active work is safe to interrupt</span>
+            </div>
+          )}
+        </div>
+      </div>
+    </div>
+  );
+}

ui/src/components/InstanceSidebar.tsx

@@ -1,5 +1,5 @@
 import { useQuery } from "@tanstack/react-query";
-import { Clock3, FlaskConical, Puzzle, Settings } from "lucide-react";
+import { Clock3, FlaskConical, Puzzle, Settings, SlidersHorizontal } from "lucide-react";
 import { NavLink } from "@/lib/router";
 import { pluginsApi } from "@/api/plugins";
 import { queryKeys } from "@/lib/queryKeys";
@@ -22,6 +22,7 @@ export function InstanceSidebar() {
 
       <nav className="flex-1 min-h-0 overflow-y-auto scrollbar-auto-hide flex flex-col gap-4 px-3 py-2">
         <div className="flex flex-col gap-0.5">
+          <SidebarNavItem to="/instance/settings/general" label="General" icon={SlidersHorizontal} end />
           <SidebarNavItem to="/instance/settings/heartbeats" label="Heartbeats" icon={Clock3} end />
           <SidebarNavItem to="/instance/settings/experimental" label="Experimental" icon={FlaskConical} />
           <SidebarNavItem to="/instance/settings/plugins" label="Plugins" icon={Puzzle} />

ui/src/components/Layout.tsx

@@ -15,6 +15,7 @@ import { NewAgentDialog } from "./NewAgentDialog";
 import { ToastViewport } from "./ToastViewport";
 import { MobileBottomNav } from "./MobileBottomNav";
 import { WorktreeBanner } from "./WorktreeBanner";
+import { DevRestartBanner } from "./DevRestartBanner";
 import { useDialog } from "../context/DialogContext";
 import { usePanel } from "../context/PanelContext";
 import { useCompany } from "../context/CompanyContext";
@@ -78,6 +79,11 @@ export function Layout() {
     queryKey: queryKeys.health,
     queryFn: () => healthApi.get(),
     retry: false,
+    refetchInterval: (query) => {
+      const data = query.state.data as { devServer?: { enabled?: boolean } } | undefined;
+      return data?.devServer?.enabled ? 2000 : false;
+    },
+    refetchIntervalInBackground: true,
   });
 
   useEffect(() => {
@@ -266,6 +272,7 @@ export function Layout() {
         Skip to Main Content
       </a>
       <WorktreeBanner />
+      <DevRestartBanner devServer={health?.devServer} />
       <div className={cn("min-h-0 flex-1", isMobile ? "w-full" : "flex overflow-hidden")}>
         {isMobile && sidebarOpen && (
           <button

ui/src/components/transcript/useLiveRunTranscripts.ts

@@ -1,7 +1,10 @@
 import { useEffect, useMemo, useRef, useState } from "react";
+import { useQuery } from "@tanstack/react-query";
 import type { LiveEvent } from "@paperclipai/shared";
+import { instanceSettingsApi } from "../../api/instanceSettings";
 import { heartbeatsApi, type LiveRunForIssue } from "../../api/heartbeats";
 import { buildTranscript, getUIAdapter, type RunLogChunk, type TranscriptEntry } from "../../adapters";
+import { queryKeys } from "../../lib/queryKeys";
 
 const LOG_POLL_INTERVAL_MS = 2000;
 const LOG_READ_LIMIT_BYTES = 256_000;
@@ -65,6 +68,10 @@ export function useLiveRunTranscripts({
   const seenChunkKeysRef = useRef(new Set<string>());
   const pendingLogRowsByRunRef = useRef(new Map<string, string>());
   const logOffsetByRunRef = useRef(new Map<string, number>());
+  const { data: generalSettings } = useQuery({
+    queryKey: queryKeys.instance.generalSettings,
+    queryFn: () => instanceSettingsApi.getGeneral(),
+  });
 
   const runById = useMemo(() => new Map(runs.map((run) => [run.id, run])), [runs]);
   const activeRunIds = useMemo(
@@ -267,12 +274,18 @@ export function useLiveRunTranscripts({
 
   const transcriptByRun = useMemo(() => {
     const next = new Map<string, TranscriptEntry[]>();
+    const censorUsernameInLogs = generalSettings?.censorUsernameInLogs === true;
     for (const run of runs) {
       const adapter = getUIAdapter(run.adapterType);
-      next.set(run.id, buildTranscript(chunksByRun.get(run.id) ?? [], adapter.parseStdoutLine));
+      next.set(
+        run.id,
+        buildTranscript(chunksByRun.get(run.id) ?? [], adapter.parseStdoutLine, {
+          censorUsernameInLogs,
+        }),
+      );
     }
     return next;
-  }, [chunksByRun, runs]);
+  }, [chunksByRun, generalSettings?.censorUsernameInLogs, runs]);
 
   return {
     transcriptByRun,