Harden control-plane safety and issue identifiers (#5292)

## Thinking Path

> - Paperclip relies on issue identifiers, execution policies, and agent
heartbeat rules to keep autonomous work auditable.
> - Safety checks need to reject ambiguous agent handoffs, and
identifier parsing needs to support Cloud tenant prefixes.
> - Agent instructions also need to make final-disposition rules
explicit so work does not stall in vague states.
> - This pull request isolates backend correctness and governance
hardening from the UI and recovery-system-notice branches.
> - The benefit is safer in-review transitions, better identifier
compatibility, and clearer agent operating contracts.

## What Changed

- Fixed run-aware confirmation ordering and interrupted-run state
cleanup.
- Added Cloud tenant identity bootstrap and alphanumeric issue
identifier support across shared parsing and server routes.
- Guarded agent-authored `in_review` updates unless a real review path
exists.
- Tightened heartbeat disposition instructions in adapter
utilities/default AGENTS/Paperclip skill.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run packages/shared/src/issue-references.test.ts
server/src/__tests__/issue-identifier-routes.test.ts
server/src/__tests__/issue-execution-policy-routes.test.ts
packages/adapter-utils/src/server-utils.test.ts` initially had the first
execution-policy test hit Vitest's 5s timeout under the parallel bundle
while the rest passed.
- `pnpm exec vitest run
server/src/__tests__/issue-execution-policy-routes.test.ts
--testTimeout=20000` passed with 10/10 tests.

- Follow-up: `pnpm run typecheck:build-gaps` passed.
- Follow-up: `pnpm --filter @paperclipai/ui typecheck` passed.
- Follow-up: `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/company-portability.test.ts
server/src/__tests__/costs-service.test.ts` passed.
- Follow-up: `pnpm vitest run ui/src/context/LiveUpdatesProvider.test.ts
ui/src/lib/issue-chat-messages.test.ts
ui/src/lib/issue-reference.test.ts
ui/src/lib/issue-timeline-events.test.ts` passed.

## Risks

- Medium control-plane risk: in-review update validation changes agent
behavior. The error message is explicit and tests cover allowed review
paths.

## Model Used

- OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
This commit is contained in:
Dotta 2026-05-06 07:49:47 -05:00 committed by GitHub
parent a1b30c9f35
commit 68f69975a4
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GPG key ID: B5690EEEBB952194
17 changed files with 875 additions and 90 deletions

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@ -2343,7 +2343,7 @@ describe("company portability", () => {
expect(materializedFiles["AGENTS.md"]).not.toContain('name: "ClaudeCoder"');
});
it("does not silently add local adapter permission bypasses on import", async () => {
it("does not implicitly add local adapter permission bypass defaults on import", async () => {
const portability = companyPortabilityService({} as any);
companySvc.create.mockResolvedValue({
@ -2389,12 +2389,10 @@ describe("company portability", () => {
collisionStrategy: "rename",
}, "user-1");
expect(agentSvc.create).toHaveBeenCalledWith("company-imported", expect.objectContaining({
adapterType: "claude_local",
adapterConfig: expect.not.objectContaining({
dangerouslySkipPermissions: expect.anything(),
}),
}));
// Imports must preserve safe-by-default local adapter settings unless the package says otherwise.
const firstCreateInput = agentSvc.create.mock.calls[0]?.[1] as Record<string, any>;
expect(firstCreateInput?.adapterConfig).toBeTruthy();
expect(firstCreateInput.adapterConfig?.dangerouslySkipPermissions).toBeUndefined();
await portability.importBundle({
source: {
@ -2432,12 +2430,9 @@ describe("company portability", () => {
args: ["--legacy-arg"],
}),
}));
expect(agentSvc.create).toHaveBeenLastCalledWith("company-imported", expect.objectContaining({
adapterConfig: expect.not.objectContaining({
dangerouslyBypassApprovalsAndSandbox: expect.anything(),
dangerouslyBypassSandbox: expect.anything(),
}),
}));
const lastCreateInput = agentSvc.create.mock.calls.at(-1)?.[1] as Record<string, any>;
expect(lastCreateInput?.adapterConfig).toBeTruthy();
expect(lastCreateInput.adapterConfig?.dangerouslyBypassApprovalsAndSandbox).toBeUndefined();
});
it("preserves issue labelIds through export and import round-trip", async () => {
@ -2585,6 +2580,125 @@ describe("company portability", () => {
);
});
it("does not export raw comment author user ids", async () => {
const portability = companyPortabilityService({} as any);
projectSvc.list.mockResolvedValue([]);
projectSvc.listWorkspaces.mockResolvedValue([]);
issueSvc.list.mockResolvedValue([
{
id: "issue-1",
identifier: "PAP-1",
title: "Private board note",
description: null,
projectId: null,
projectWorkspaceId: null,
assigneeAgentId: null,
status: "todo",
priority: "medium",
labelIds: [],
billingCode: null,
executionWorkspaceSettings: null,
assigneeAdapterOverrides: null,
},
]);
issueSvc.listComments.mockResolvedValue([
{
id: "comment-1",
issueId: "issue-1",
companyId: "company-1",
authorType: "user",
authorAgentId: null,
authorUserId: "local-board",
body: "Need private follow-up.",
presentation: null,
metadata: null,
createdAt: new Date("2026-05-04T12:00:00.000Z"),
updatedAt: new Date("2026-05-04T12:00:00.000Z"),
},
]);
const exported = await portability.exportBundle("company-1", {
include: { company: true, agents: false, projects: false, issues: true },
});
const extension = asTextFile(exported.files[".paperclip.yaml"]);
expect(extension).toContain('authorType: "user"');
expect(extension).not.toContain("authorUserId: local-board");
});
it("downgrades user-authored imported comments to system when no importing user exists", async () => {
const portability = companyPortabilityService({} as any);
projectSvc.list.mockResolvedValue([]);
projectSvc.listWorkspaces.mockResolvedValue([]);
issueSvc.list.mockResolvedValue([
{
id: "issue-1",
identifier: "PAP-1",
title: "Private board note",
description: null,
projectId: null,
projectWorkspaceId: null,
assigneeAgentId: null,
status: "todo",
priority: "medium",
labelIds: [],
billingCode: null,
executionWorkspaceSettings: null,
assigneeAdapterOverrides: null,
},
]);
issueSvc.listComments.mockResolvedValue([
{
id: "comment-1",
issueId: "issue-1",
companyId: "company-1",
authorType: "user",
authorAgentId: null,
authorUserId: "local-board",
body: "Need private follow-up.",
presentation: null,
metadata: null,
createdAt: new Date("2026-05-04T12:00:00.000Z"),
updatedAt: new Date("2026-05-04T12:00:00.000Z"),
},
]);
const exported = await portability.exportBundle("company-1", {
include: { company: true, agents: false, projects: false, issues: true },
});
companySvc.create.mockResolvedValue({ id: "company-imported", name: "Imported" });
accessSvc.ensureMembership.mockResolvedValue(undefined);
agentSvc.list.mockResolvedValue([]);
projectSvc.list.mockResolvedValue([]);
issueSvc.create.mockResolvedValue({ id: "issue-imported", title: "Private board note" });
const result = await portability.importBundle({
source: { type: "inline", rootPath: exported.rootPath, files: exported.files },
include: { company: true, agents: false, projects: false, issues: true },
target: { mode: "new_company", newCompanyName: "Imported" },
agents: "all",
collisionStrategy: "rename",
}, null);
expect(issueSvc.addComment).toHaveBeenCalledWith(
"issue-imported",
"Need private follow-up.",
{ agentId: undefined, userId: undefined },
{
authorType: "system",
presentation: null,
metadata: null,
createdAt: "2026-05-04T12:00:00.000Z",
},
);
expect(result.warnings).toContain(
"Comment on task pap-1 was imported as a system comment because no importing user was available.",
);
});
it("strips root AGENTS frontmatter when importing a nested agent entry path", async () => {
const portability = companyPortabilityService({} as any);
@ -2755,7 +2869,7 @@ describe("company portability", () => {
expect(secretSvc.normalizeAdapterConfigForPersistence).toHaveBeenCalledWith(
"company-imported",
expect.any(Object),
expect.anything(),
{ strictMode: false },
);
expect(agentSvc.create).toHaveBeenCalledWith("company-imported", expect.objectContaining({
@ -2821,7 +2935,10 @@ describe("company portability", () => {
expect(secretSvc.normalizeAdapterConfigForPersistence).toHaveBeenCalledWith(
"company-1",
expect.any(Object),
expect.objectContaining({
model: "gpt-5.4",
extraArgs: ["--skip-git-repo-check"],
}),
{ strictMode: false },
);
expect(agentSvc.update).toHaveBeenCalledWith("agent-1", expect.objectContaining({