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[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Reliable execution depends on heartbeat routing, issue lifecycle semantics, telemetry, and a fast enough local verification loop to keep regressions visible > - The remaining commits on this branch were mostly server/runtime correctness fixes plus test and documentation follow-ups in that area > - Those changes are logically separate from the UI-focused issue-detail and workspace/navigation branches even when they touch overlapping issue APIs > - This pull request groups the execution reliability, heartbeat, telemetry, and tooling changes into one standalone branch > - The benefit is a focused review of the control-plane correctness work, including the follow-up fix that restored the implicit comment-reopen helpers after branch splitting ## What Changed - Hardened issue/heartbeat execution behavior, including self-review stage skipping, deferred mention wakes during active execution, stranded execution recovery, active-run scoping, assignee resolution, and blocked-to-todo wake resumption - Reduced noisy polling/logging overhead by trimming issue run payloads, compacting persisted run logs, silencing high-volume request logs, and capping heartbeat-run queries in dashboard/inbox surfaces - Expanded telemetry and status semantics with adapter/model fields on task completion plus clearer status guidance in docs/onboarding material - Updated test infrastructure and verification defaults with faster route-test module isolation, cheaper default `pnpm test`, e2e isolation from local state, and repo verification follow-ups - Included docs/release housekeeping from the branch and added a small follow-up commit restoring the implicit comment-reopen helpers that were dropped during branch reconstruction ## Verification - `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` - `pnpm vitest run server/src/__tests__/http-log-policy.test.ts server/src/__tests__/heartbeat-run-log.test.ts server/src/__tests__/health.test.ts` - `server/src/__tests__/activity-service.test.ts`, `server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and `server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted on this host but the embedded Postgres harness reported init-script/data-dir problems and skipped or failed to start, so they are noted as environment-limited ## Risks - Medium: this branch changes core issue/heartbeat routing and reopen/wakeup behavior, so regressions would affect agent execution flow rather than isolated UI polish - Because it also updates verification infrastructure, reviewers should pay attention to whether the new tests are asserting the right failure modes and not just reshaping harness behavior ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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106 changed files with 4682 additions and 713 deletions
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@ -1,8 +1,6 @@
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import express from "express";
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import request from "supertest";
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import { beforeEach, describe, expect, it, vi } from "vitest";
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import { agentRoutes } from "../routes/agents.js";
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import { errorHandler } from "../middleware/index.js";
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const mockAgentService = vi.hoisted(() => ({
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getById: vi.fn(),
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@ -32,6 +30,8 @@ const mockSecretService = vi.hoisted(() => ({
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}));
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const mockLogActivity = vi.hoisted(() => vi.fn());
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const mockSyncInstructionsBundleConfigFromFilePath = vi.hoisted(() => vi.fn());
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const mockFindServerAdapter = vi.hoisted(() => vi.fn());
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vi.mock("../services/index.js", () => ({
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agentService: () => mockAgentService,
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@ -45,16 +45,43 @@ vi.mock("../services/index.js", () => ({
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issueService: () => ({}),
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logActivity: mockLogActivity,
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secretService: () => mockSecretService,
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syncInstructionsBundleConfigFromFilePath: vi.fn((_agent, config) => config),
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syncInstructionsBundleConfigFromFilePath: mockSyncInstructionsBundleConfigFromFilePath,
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workspaceOperationService: () => ({}),
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}));
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vi.mock("../adapters/index.js", () => ({
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findServerAdapter: vi.fn((_type: string) => ({ type: _type })),
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findServerAdapter: mockFindServerAdapter,
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listAdapterModels: vi.fn(),
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}));
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function createApp() {
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function registerModuleMocks() {
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vi.doMock("../services/index.js", () => ({
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agentService: () => mockAgentService,
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agentInstructionsService: () => mockAgentInstructionsService,
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accessService: () => mockAccessService,
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approvalService: () => ({}),
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companySkillService: () => ({ listRuntimeSkillEntries: vi.fn() }),
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budgetService: () => ({}),
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heartbeatService: () => ({}),
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issueApprovalService: () => ({}),
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issueService: () => ({}),
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logActivity: mockLogActivity,
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secretService: () => mockSecretService,
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syncInstructionsBundleConfigFromFilePath: mockSyncInstructionsBundleConfigFromFilePath,
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workspaceOperationService: () => ({}),
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}));
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vi.doMock("../adapters/index.js", () => ({
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findServerAdapter: mockFindServerAdapter,
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listAdapterModels: vi.fn(),
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}));
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}
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async function createApp() {
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const [{ agentRoutes }, { errorHandler }] = await Promise.all([
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vi.importActual<typeof import("../routes/agents.js")>("../routes/agents.js"),
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vi.importActual<typeof import("../middleware/index.js")>("../middleware/index.js"),
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]);
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const app = express();
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app.use(express.json());
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app.use((req, _res, next) => {
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@ -92,7 +119,14 @@ function makeAgent() {
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describe("agent instructions bundle routes", () => {
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beforeEach(() => {
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vi.clearAllMocks();
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vi.resetModules();
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vi.doUnmock("../routes/agents.js");
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vi.doUnmock("../routes/authz.js");
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vi.doUnmock("../middleware/index.js");
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registerModuleMocks();
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vi.resetAllMocks();
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mockSyncInstructionsBundleConfigFromFilePath.mockImplementation((_agent, config) => config);
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mockFindServerAdapter.mockImplementation((_type: string) => ({ type: _type }));
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mockAgentService.getById.mockResolvedValue(makeAgent());
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mockAgentService.update.mockImplementation(async (_id: string, patch: Record<string, unknown>) => ({
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...makeAgent(),
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@ -155,7 +189,7 @@ describe("agent instructions bundle routes", () => {
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});
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it("returns bundle metadata", async () => {
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const res = await request(createApp())
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const res = await request(await createApp())
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.get("/api/agents/11111111-1111-4111-8111-111111111111/instructions-bundle?companyId=company-1");
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expect(res.status, JSON.stringify(res.body)).toBe(200);
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@ -169,7 +203,7 @@ describe("agent instructions bundle routes", () => {
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});
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it("writes a bundle file and persists compatibility config", async () => {
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const res = await request(createApp())
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const res = await request(await createApp())
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.put("/api/agents/11111111-1111-4111-8111-111111111111/instructions-bundle/file?companyId=company-1")
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.send({
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path: "AGENTS.md",
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@ -211,7 +245,7 @@ describe("agent instructions bundle routes", () => {
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},
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});
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const res = await request(createApp())
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const res = await request(await createApp())
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.patch("/api/agents/11111111-1111-4111-8111-111111111111?companyId=company-1")
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.send({
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adapterType: "claude_local",
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@ -250,7 +284,7 @@ describe("agent instructions bundle routes", () => {
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},
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});
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const res = await request(createApp())
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const res = await request(await createApp())
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.patch("/api/agents/11111111-1111-4111-8111-111111111111?companyId=company-1")
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.send({
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adapterConfig: {
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@ -288,7 +322,7 @@ describe("agent instructions bundle routes", () => {
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},
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});
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const res = await request(createApp())
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const res = await request(await createApp())
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.patch("/api/agents/11111111-1111-4111-8111-111111111111?companyId=company-1")
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.send({
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replaceAdapterConfig: true,
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