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[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Reliable execution depends on heartbeat routing, issue lifecycle semantics, telemetry, and a fast enough local verification loop to keep regressions visible > - The remaining commits on this branch were mostly server/runtime correctness fixes plus test and documentation follow-ups in that area > - Those changes are logically separate from the UI-focused issue-detail and workspace/navigation branches even when they touch overlapping issue APIs > - This pull request groups the execution reliability, heartbeat, telemetry, and tooling changes into one standalone branch > - The benefit is a focused review of the control-plane correctness work, including the follow-up fix that restored the implicit comment-reopen helpers after branch splitting ## What Changed - Hardened issue/heartbeat execution behavior, including self-review stage skipping, deferred mention wakes during active execution, stranded execution recovery, active-run scoping, assignee resolution, and blocked-to-todo wake resumption - Reduced noisy polling/logging overhead by trimming issue run payloads, compacting persisted run logs, silencing high-volume request logs, and capping heartbeat-run queries in dashboard/inbox surfaces - Expanded telemetry and status semantics with adapter/model fields on task completion plus clearer status guidance in docs/onboarding material - Updated test infrastructure and verification defaults with faster route-test module isolation, cheaper default `pnpm test`, e2e isolation from local state, and repo verification follow-ups - Included docs/release housekeeping from the branch and added a small follow-up commit restoring the implicit comment-reopen helpers that were dropped during branch reconstruction ## Verification - `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` - `pnpm vitest run server/src/__tests__/http-log-policy.test.ts server/src/__tests__/heartbeat-run-log.test.ts server/src/__tests__/health.test.ts` - `server/src/__tests__/activity-service.test.ts`, `server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and `server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted on this host but the embedded Postgres harness reported init-script/data-dir problems and skipped or failed to start, so they are noted as environment-limited ## Risks - Medium: this branch changes core issue/heartbeat routing and reopen/wakeup behavior, so regressions would affect agent execution flow rather than isolated UI polish - Because it also updates verification infrastructure, reviewers should pay attention to whether the new tests are asserting the right failure modes and not just reshaping harness behavior ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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106 changed files with 4682 additions and 713 deletions
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@ -1,8 +1,6 @@
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import express from "express";
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import request from "supertest";
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import { beforeEach, describe, expect, it, vi } from "vitest";
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import { errorHandler } from "../middleware/index.js";
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import { agentRoutes } from "../routes/agents.js";
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const agentId = "11111111-1111-4111-8111-111111111111";
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const companyId = "22222222-2222-4222-8222-222222222222";
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@ -34,6 +32,7 @@ const baseAgent = {
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const mockAgentService = vi.hoisted(() => ({
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getById: vi.fn(),
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list: vi.fn(),
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create: vi.fn(),
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updatePermissions: vi.fn(),
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getChainOfCommand: vi.fn(),
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@ -89,31 +88,34 @@ const mockWorkspaceOperationService = vi.hoisted(() => ({}));
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const mockLogActivity = vi.hoisted(() => vi.fn());
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const mockTrackAgentCreated = vi.hoisted(() => vi.fn());
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const mockGetTelemetryClient = vi.hoisted(() => vi.fn());
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const mockSyncInstructionsBundleConfigFromFilePath = vi.hoisted(() => vi.fn());
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vi.mock("@paperclipai/shared/telemetry", () => ({
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trackAgentCreated: mockTrackAgentCreated,
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trackErrorHandlerCrash: vi.fn(),
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}));
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function registerModuleMocks() {
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vi.doMock("@paperclipai/shared/telemetry", () => ({
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trackAgentCreated: mockTrackAgentCreated,
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trackErrorHandlerCrash: vi.fn(),
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}));
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vi.mock("../telemetry.js", () => ({
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getTelemetryClient: mockGetTelemetryClient,
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}));
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vi.doMock("../telemetry.js", () => ({
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getTelemetryClient: mockGetTelemetryClient,
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}));
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vi.mock("../services/index.js", () => ({
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agentService: () => mockAgentService,
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agentInstructionsService: () => mockAgentInstructionsService,
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accessService: () => mockAccessService,
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approvalService: () => mockApprovalService,
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companySkillService: () => mockCompanySkillService,
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budgetService: () => mockBudgetService,
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heartbeatService: () => mockHeartbeatService,
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issueApprovalService: () => mockIssueApprovalService,
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issueService: () => mockIssueService,
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logActivity: mockLogActivity,
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secretService: () => mockSecretService,
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syncInstructionsBundleConfigFromFilePath: vi.fn((_agent, config) => config),
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workspaceOperationService: () => mockWorkspaceOperationService,
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}));
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vi.doMock("../services/index.js", () => ({
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agentService: () => mockAgentService,
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agentInstructionsService: () => mockAgentInstructionsService,
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accessService: () => mockAccessService,
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approvalService: () => mockApprovalService,
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companySkillService: () => mockCompanySkillService,
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budgetService: () => mockBudgetService,
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heartbeatService: () => mockHeartbeatService,
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issueApprovalService: () => mockIssueApprovalService,
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issueService: () => mockIssueService,
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logActivity: mockLogActivity,
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secretService: () => mockSecretService,
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syncInstructionsBundleConfigFromFilePath: mockSyncInstructionsBundleConfigFromFilePath,
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workspaceOperationService: () => mockWorkspaceOperationService,
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}));
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}
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function createDbStub() {
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return {
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@ -131,7 +133,11 @@ function createDbStub() {
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};
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}
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function createApp(actor: Record<string, unknown>) {
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async function createApp(actor: Record<string, unknown>) {
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const [{ errorHandler }, { agentRoutes }] = await Promise.all([
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vi.importActual<typeof import("../middleware/index.js")>("../middleware/index.js"),
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vi.importActual<typeof import("../routes/agents.js")>("../routes/agents.js"),
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]);
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const app = express();
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app.use(express.json());
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app.use((req, _res, next) => {
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@ -145,9 +151,18 @@ function createApp(actor: Record<string, unknown>) {
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describe("agent permission routes", () => {
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beforeEach(() => {
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vi.resetAllMocks();
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vi.resetModules();
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vi.doUnmock("@paperclipai/shared/telemetry");
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vi.doUnmock("../telemetry.js");
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vi.doUnmock("../services/index.js");
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vi.doUnmock("../routes/agents.js");
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vi.doUnmock("../middleware/index.js");
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registerModuleMocks();
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vi.clearAllMocks();
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mockSyncInstructionsBundleConfigFromFilePath.mockImplementation((_agent, config) => config);
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mockGetTelemetryClient.mockReturnValue({ track: vi.fn() });
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mockAgentService.getById.mockResolvedValue(baseAgent);
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mockAgentService.list.mockResolvedValue([baseAgent]);
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mockAgentService.getChainOfCommand.mockResolvedValue([]);
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mockAgentService.resolveByReference.mockResolvedValue({ ambiguous: false, agent: baseAgent });
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mockAgentService.create.mockResolvedValue(baseAgent);
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@ -191,7 +206,7 @@ describe("agent permission routes", () => {
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});
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it("grants tasks:assign by default when board creates a new agent", async () => {
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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@ -226,8 +241,26 @@ describe("agent permission routes", () => {
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);
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});
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it("rejects unsupported query parameters on the agent list route", async () => {
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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isInstanceAdmin: true,
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companyIds: [companyId],
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});
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const res = await request(app)
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.get(`/api/companies/${companyId}/agents`)
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.query({ urlKey: "builder" });
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expect(res.status).toBe(400);
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expect(res.body.error).toContain("urlKey");
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expect(mockAgentService.list).not.toHaveBeenCalled();
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});
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it("normalizes direct agent creation to disable timer heartbeats by default", async () => {
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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@ -264,7 +297,7 @@ describe("agent permission routes", () => {
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});
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it("normalizes hire requests to disable timer heartbeats by default", async () => {
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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@ -315,7 +348,7 @@ describe("agent permission routes", () => {
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},
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]);
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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permissions: { canCreateAgents: true },
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});
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "local_implicit",
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@ -371,7 +404,7 @@ describe("agent permission routes", () => {
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},
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]);
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const app = createApp({
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const app = await createApp({
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type: "agent",
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agentId,
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companyId,
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@ -402,7 +435,7 @@ describe("agent permission routes", () => {
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status: "running",
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});
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const app = createApp({
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const app = await createApp({
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type: "board",
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userId: "board-user",
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source: "session",
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