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[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Reliable execution depends on heartbeat routing, issue lifecycle semantics, telemetry, and a fast enough local verification loop to keep regressions visible > - The remaining commits on this branch were mostly server/runtime correctness fixes plus test and documentation follow-ups in that area > - Those changes are logically separate from the UI-focused issue-detail and workspace/navigation branches even when they touch overlapping issue APIs > - This pull request groups the execution reliability, heartbeat, telemetry, and tooling changes into one standalone branch > - The benefit is a focused review of the control-plane correctness work, including the follow-up fix that restored the implicit comment-reopen helpers after branch splitting ## What Changed - Hardened issue/heartbeat execution behavior, including self-review stage skipping, deferred mention wakes during active execution, stranded execution recovery, active-run scoping, assignee resolution, and blocked-to-todo wake resumption - Reduced noisy polling/logging overhead by trimming issue run payloads, compacting persisted run logs, silencing high-volume request logs, and capping heartbeat-run queries in dashboard/inbox surfaces - Expanded telemetry and status semantics with adapter/model fields on task completion plus clearer status guidance in docs/onboarding material - Updated test infrastructure and verification defaults with faster route-test module isolation, cheaper default `pnpm test`, e2e isolation from local state, and repo verification follow-ups - Included docs/release housekeeping from the branch and added a small follow-up commit restoring the implicit comment-reopen helpers that were dropped during branch reconstruction ## Verification - `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` - `pnpm vitest run server/src/__tests__/http-log-policy.test.ts server/src/__tests__/heartbeat-run-log.test.ts server/src/__tests__/health.test.ts` - `server/src/__tests__/activity-service.test.ts`, `server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and `server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted on this host but the embedded Postgres harness reported init-script/data-dir problems and skipped or failed to start, so they are noted as environment-limited ## Risks - Medium: this branch changes core issue/heartbeat routing and reopen/wakeup behavior, so regressions would affect agent execution flow rather than isolated UI polish - Because it also updates verification infrastructure, reviewers should pay attention to whether the new tests are asserting the right failure modes and not just reshaping harness behavior ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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106 changed files with 4682 additions and 713 deletions
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@ -39,7 +39,17 @@ const mockFeedbackService = vi.hoisted(() => ({
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saveIssueVote: vi.fn(),
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}));
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function registerServiceMocks() {
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vi.mock("../services/index.js", () => ({
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accessService: () => mockAccessService,
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agentService: () => mockAgentService,
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budgetService: () => mockBudgetService,
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companyPortabilityService: () => mockCompanyPortabilityService,
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companyService: () => mockCompanyService,
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feedbackService: () => mockFeedbackService,
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logActivity: mockLogActivity,
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}));
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function registerModuleMocks() {
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vi.doMock("../services/index.js", () => ({
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accessService: () => mockAccessService,
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agentService: () => mockAgentService,
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@ -52,8 +62,10 @@ function registerServiceMocks() {
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}
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async function createApp(actor: Record<string, unknown>) {
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const { companyRoutes } = await import("../routes/companies.js");
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const { errorHandler } = await import("../middleware/index.js");
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const [{ companyRoutes }, { errorHandler }] = await Promise.all([
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vi.importActual<typeof import("../routes/companies.js")>("../routes/companies.js"),
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vi.importActual<typeof import("../middleware/index.js")>("../middleware/index.js"),
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]);
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const app = express();
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app.use(express.json());
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app.use((req, _res, next) => {
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@ -68,7 +80,10 @@ async function createApp(actor: Record<string, unknown>) {
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describe("company portability routes", () => {
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beforeEach(() => {
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vi.resetModules();
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registerServiceMocks();
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vi.doUnmock("../routes/companies.js");
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vi.doUnmock("../routes/authz.js");
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vi.doUnmock("../middleware/index.js");
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registerModuleMocks();
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vi.resetAllMocks();
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});
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@ -199,6 +214,90 @@ describe("company portability routes", () => {
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expect(mockCompanyPortabilityService.previewImport).not.toHaveBeenCalled();
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});
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it("rejects replace collision strategy on CEO-safe import apply routes", async () => {
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mockAgentService.getById.mockResolvedValue({
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id: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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role: "ceo",
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});
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const app = await createApp({
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type: "agent",
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agentId: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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source: "agent_key",
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runId: "run-1",
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});
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const res = await request(app)
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.post("/api/companies/11111111-1111-4111-8111-111111111111/imports/apply")
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.send({
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source: { type: "inline", files: { "COMPANY.md": "---\nname: Test\n---\n" } },
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include: { company: true, agents: true, projects: false, issues: false },
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target: { mode: "existing_company", companyId: "11111111-1111-4111-8111-111111111111" },
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collisionStrategy: "replace",
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});
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expect(res.status).toBe(403);
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expect(res.body.error).toContain("does not allow replace");
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expect(mockCompanyPortabilityService.importBundle).not.toHaveBeenCalled();
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});
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it("rejects non-CEO agents from CEO-safe import preview routes", async () => {
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mockAgentService.getById.mockResolvedValue({
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id: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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role: "engineer",
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});
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const app = await createApp({
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type: "agent",
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agentId: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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source: "agent_key",
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runId: "run-1",
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});
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const res = await request(app)
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.post("/api/companies/11111111-1111-4111-8111-111111111111/imports/preview")
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.send({
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source: { type: "inline", files: { "COMPANY.md": "---\nname: Test\n---\n" } },
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include: { company: true, agents: true, projects: false, issues: false },
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target: { mode: "existing_company", companyId: "11111111-1111-4111-8111-111111111111" },
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collisionStrategy: "rename",
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});
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expect(res.status).toBe(403);
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expect(res.body.error).toContain("Only CEO agents");
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expect(mockCompanyPortabilityService.previewImport).not.toHaveBeenCalled();
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});
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it("rejects non-CEO agents from CEO-safe import apply routes", async () => {
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mockAgentService.getById.mockResolvedValue({
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id: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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role: "engineer",
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});
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const app = await createApp({
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type: "agent",
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agentId: "agent-1",
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companyId: "11111111-1111-4111-8111-111111111111",
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source: "agent_key",
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runId: "run-1",
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});
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const res = await request(app)
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.post("/api/companies/11111111-1111-4111-8111-111111111111/imports/apply")
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.send({
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source: { type: "inline", files: { "COMPANY.md": "---\nname: Test\n---\n" } },
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include: { company: true, agents: true, projects: false, issues: false },
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target: { mode: "existing_company", companyId: "11111111-1111-4111-8111-111111111111" },
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collisionStrategy: "rename",
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});
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expect(res.status).toBe(403);
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expect(res.body.error).toContain("Only CEO agents");
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expect(mockCompanyPortabilityService.importBundle).not.toHaveBeenCalled();
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});
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it("requires instance admin for new-company import apply", async () => {
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const app = await createApp({
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type: "board",
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