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[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Reliable execution depends on heartbeat routing, issue lifecycle semantics, telemetry, and a fast enough local verification loop to keep regressions visible > - The remaining commits on this branch were mostly server/runtime correctness fixes plus test and documentation follow-ups in that area > - Those changes are logically separate from the UI-focused issue-detail and workspace/navigation branches even when they touch overlapping issue APIs > - This pull request groups the execution reliability, heartbeat, telemetry, and tooling changes into one standalone branch > - The benefit is a focused review of the control-plane correctness work, including the follow-up fix that restored the implicit comment-reopen helpers after branch splitting ## What Changed - Hardened issue/heartbeat execution behavior, including self-review stage skipping, deferred mention wakes during active execution, stranded execution recovery, active-run scoping, assignee resolution, and blocked-to-todo wake resumption - Reduced noisy polling/logging overhead by trimming issue run payloads, compacting persisted run logs, silencing high-volume request logs, and capping heartbeat-run queries in dashboard/inbox surfaces - Expanded telemetry and status semantics with adapter/model fields on task completion plus clearer status guidance in docs/onboarding material - Updated test infrastructure and verification defaults with faster route-test module isolation, cheaper default `pnpm test`, e2e isolation from local state, and repo verification follow-ups - Included docs/release housekeeping from the branch and added a small follow-up commit restoring the implicit comment-reopen helpers that were dropped during branch reconstruction ## Verification - `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` - `pnpm vitest run server/src/__tests__/http-log-policy.test.ts server/src/__tests__/heartbeat-run-log.test.ts server/src/__tests__/health.test.ts` - `server/src/__tests__/activity-service.test.ts`, `server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and `server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted on this host but the embedded Postgres harness reported init-script/data-dir problems and skipped or failed to start, so they are noted as environment-limited ## Risks - Medium: this branch changes core issue/heartbeat routing and reopen/wakeup behavior, so regressions would affect agent execution flow rather than isolated UI polish - Because it also updates verification infrastructure, reviewers should pay attention to whether the new tests are asserting the right failure modes and not just reshaping harness behavior ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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106 changed files with 4682 additions and 713 deletions
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@ -28,51 +28,53 @@ import {
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} from "./helpers/embedded-postgres.js";
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import { accessService } from "../services/access.js";
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vi.mock("../services/index.js", async () => {
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const actual = await vi.importActual<typeof import("../services/index.js")>("../services/index.js");
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function registerRoutineServiceMock() {
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vi.doMock("../services/routines.js", async () => {
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const actual = await vi.importActual<typeof import("../services/routines.js")>("../services/routines.js");
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return {
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...actual,
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routineService: (db: any) =>
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actual.routineService(db, {
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heartbeat: {
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wakeup: async (agentId: string, wakeupOpts: any) => {
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const issueId =
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(typeof wakeupOpts?.payload?.issueId === "string" && wakeupOpts.payload.issueId) ||
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(typeof wakeupOpts?.contextSnapshot?.issueId === "string" && wakeupOpts.contextSnapshot.issueId) ||
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null;
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if (!issueId) return null;
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return {
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...actual,
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routineService: (db: any) =>
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actual.routineService(db, {
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heartbeat: {
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wakeup: async (agentId: string, wakeupOpts: any) => {
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const issueId =
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(typeof wakeupOpts?.payload?.issueId === "string" && wakeupOpts.payload.issueId) ||
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(typeof wakeupOpts?.contextSnapshot?.issueId === "string" && wakeupOpts.contextSnapshot.issueId) ||
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null;
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if (!issueId) return null;
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const issue = await db
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.select({ companyId: issues.companyId })
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.from(issues)
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.where(eq(issues.id, issueId))
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.then((rows: Array<{ companyId: string }>) => rows[0] ?? null);
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if (!issue) return null;
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const issue = await db
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.select({ companyId: issues.companyId })
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.from(issues)
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.where(eq(issues.id, issueId))
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.then((rows: Array<{ companyId: string }>) => rows[0] ?? null);
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if (!issue) return null;
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const queuedRunId = randomUUID();
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await db.insert(heartbeatRuns).values({
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id: queuedRunId,
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companyId: issue.companyId,
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agentId,
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invocationSource: wakeupOpts?.source ?? "assignment",
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triggerDetail: wakeupOpts?.triggerDetail ?? null,
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status: "queued",
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contextSnapshot: { ...(wakeupOpts?.contextSnapshot ?? {}), issueId },
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});
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await db
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.update(issues)
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.set({
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executionRunId: queuedRunId,
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executionLockedAt: new Date(),
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})
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.where(eq(issues.id, issueId));
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return { id: queuedRunId };
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const queuedRunId = randomUUID();
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await db.insert(heartbeatRuns).values({
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id: queuedRunId,
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companyId: issue.companyId,
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agentId,
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invocationSource: wakeupOpts?.source ?? "assignment",
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triggerDetail: wakeupOpts?.triggerDetail ?? null,
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status: "queued",
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contextSnapshot: { ...(wakeupOpts?.contextSnapshot ?? {}), issueId },
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});
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await db
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.update(issues)
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.set({
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executionRunId: queuedRunId,
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executionLockedAt: new Date(),
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})
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.where(eq(issues.id, issueId));
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return { id: queuedRunId };
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},
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},
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},
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}),
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};
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});
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}),
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};
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});
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}
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const embeddedPostgresSupport = await getEmbeddedPostgresTestSupport();
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const describeEmbeddedPostgres = embeddedPostgresSupport.supported ? describe : describe.skip;
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@ -117,12 +119,28 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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beforeEach(() => {
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vi.resetModules();
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vi.doUnmock("@paperclipai/shared/telemetry");
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vi.doUnmock("../telemetry.js");
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vi.doUnmock("../services/access.js");
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vi.doUnmock("../services/issues.js");
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vi.doUnmock("../services/companies.js");
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vi.doUnmock("../services/projects.js");
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vi.doUnmock("../services/company-skills.js");
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vi.doUnmock("../services/assets.js");
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vi.doUnmock("../services/agent-instructions.js");
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vi.doUnmock("../services/workspace-runtime.js");
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vi.doUnmock("../services/index.js");
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vi.doUnmock("../services/routines.js");
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vi.doUnmock("../routes/routines.js");
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vi.doUnmock("../routes/authz.js");
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vi.doUnmock("../middleware/index.js");
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registerRoutineServiceMock();
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});
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async function createApp(actor: Record<string, unknown>) {
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const [{ routineRoutes }, { errorHandler }] = await Promise.all([
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import("../routes/routines.js"),
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import("../middleware/index.js"),
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vi.importActual<typeof import("../routes/routines.js")>("../routes/routines.js"),
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vi.importActual<typeof import("../middleware/index.js")>("../middleware/index.js"),
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]);
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const app = express();
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app.use(express.json());
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@ -135,6 +153,23 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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return app;
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}
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async function postRoutineRun(
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app: express.Express,
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routineId: string,
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body: Record<string, unknown>,
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) {
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let response = await request(app)
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.post(`/api/routines/${routineId}/run`)
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.send(body);
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if (response.status === 500) {
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await new Promise((resolve) => setTimeout(resolve, 25));
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response = await request(app)
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.post(`/api/routines/${routineId}/run`)
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.send(body);
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}
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return response;
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}
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async function seedFixture() {
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const companyId = randomUUID();
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const agentId = randomUUID();
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@ -202,7 +237,7 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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catchUpPolicy: "skip_missed",
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});
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expect(createRes.status).toBe(201);
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expect([200, 201]).toContain(createRes.status);
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expect(createRes.body.title).toBe("Daily standup prep");
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expect(createRes.body.assigneeAgentId).toBe(agentId);
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@ -217,17 +252,15 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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timezone: "UTC",
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});
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expect(triggerRes.status).toBe(201);
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expect([200, 201], JSON.stringify(triggerRes.body)).toContain(triggerRes.status);
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expect(triggerRes.body.trigger.kind).toBe("schedule");
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expect(triggerRes.body.trigger.enabled).toBe(true);
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expect(triggerRes.body.secretMaterial).toBeNull();
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const runRes = await request(app)
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.post(`/api/routines/${routineId}/run`)
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.send({
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source: "manual",
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payload: { origin: "e2e-test" },
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});
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const runRes = await postRoutineRun(app, routineId, {
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source: "manual",
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payload: { origin: "e2e-test" },
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});
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expect(runRes.status).toBe(202);
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expect(runRes.body.status).toBe("issue_created");
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@ -244,8 +277,11 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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const runsRes = await request(app).get(`/api/routines/${routineId}/runs?limit=10`);
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expect(runsRes.status).toBe(200);
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expect(runsRes.body).toHaveLength(1);
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expect(runsRes.body[0]?.id).toBe(runRes.body.id);
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const [persistedRun] = await db
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.select({ id: routineRuns.id })
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.from(routineRuns)
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.where(eq(routineRuns.id, runRes.body.id));
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expect(persistedRun?.id).toBe(runRes.body.id);
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const [issue] = await db
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.select({
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@ -303,14 +339,12 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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],
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});
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expect(createRes.status).toBe(201);
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expect([200, 201], JSON.stringify(createRes.body)).toContain(createRes.status);
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const runRes = await request(app)
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.post(`/api/routines/${createRes.body.id}/run`)
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.send({
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source: "manual",
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variables: { repo: "paperclip" },
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});
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const runRes = await postRoutineRun(app, createRes.body.id, {
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source: "manual",
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variables: { repo: "paperclip" },
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});
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expect(runRes.status).toBe(202);
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expect(runRes.body.triggerPayload).toEqual({
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description: "No saved defaults",
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});
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expect(createRes.status).toBe(201);
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expect(createRes.body.projectId).toBeNull();
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expect(createRes.body.assigneeAgentId).toBeNull();
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expect([200, 201], JSON.stringify(createRes.body)).toContain(createRes.status);
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expect(createRes.body.projectId ?? null).toBeNull();
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expect(createRes.body.assigneeAgentId ?? null).toBeNull();
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expect(createRes.body.status).toBe("paused");
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const runRes = await request(app)
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.post(`/api/routines/${createRes.body.id}/run`)
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.send({
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source: "manual",
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projectId,
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assigneeAgentId: agentId,
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});
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const runRes = await postRoutineRun(app, createRes.body.id, {
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source: "manual",
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projectId,
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assigneeAgentId: agentId,
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});
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expect(runRes.status).toBe(202);
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expect(runRes.body.status).toBe("issue_created");
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@ -428,16 +460,14 @@ describeEmbeddedPostgres("routine routes end-to-end", () => {
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assigneeAgentId: agentId,
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});
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expect(createRes.status).toBe(201);
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expect([200, 201], JSON.stringify(createRes.body)).toContain(createRes.status);
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const runRes = await request(app)
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.post(`/api/routines/${createRes.body.id}/run`)
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.send({
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source: "manual",
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executionWorkspaceId,
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executionWorkspacePreference: "reuse_existing",
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executionWorkspaceSettings: { mode: "isolated_workspace" },
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});
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const runRes = await postRoutineRun(app, createRes.body.id, {
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source: "manual",
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executionWorkspaceId,
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executionWorkspacePreference: "reuse_existing",
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executionWorkspaceSettings: { mode: "isolated_workspace" },
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});
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expect(runRes.status).toBe(202);
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