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31 commits

Author SHA1 Message Date
Dotta
7f893ac4ec
[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Reliable execution depends on heartbeat routing, issue lifecycle
semantics, telemetry, and a fast enough local verification loop to keep
regressions visible
> - The remaining commits on this branch were mostly server/runtime
correctness fixes plus test and documentation follow-ups in that area
> - Those changes are logically separate from the UI-focused
issue-detail and workspace/navigation branches even when they touch
overlapping issue APIs
> - This pull request groups the execution reliability, heartbeat,
telemetry, and tooling changes into one standalone branch
> - The benefit is a focused review of the control-plane correctness
work, including the follow-up fix that restored the implicit
comment-reopen helpers after branch splitting

## What Changed

- Hardened issue/heartbeat execution behavior, including self-review
stage skipping, deferred mention wakes during active execution, stranded
execution recovery, active-run scoping, assignee resolution, and
blocked-to-todo wake resumption
- Reduced noisy polling/logging overhead by trimming issue run payloads,
compacting persisted run logs, silencing high-volume request logs, and
capping heartbeat-run queries in dashboard/inbox surfaces
- Expanded telemetry and status semantics with adapter/model fields on
task completion plus clearer status guidance in docs/onboarding material
- Updated test infrastructure and verification defaults with faster
route-test module isolation, cheaper default `pnpm test`, e2e isolation
from local state, and repo verification follow-ups
- Included docs/release housekeeping from the branch and added a small
follow-up commit restoring the implicit comment-reopen helpers that were
dropped during branch reconstruction

## Verification

- `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-telemetry-routes.test.ts`
- `pnpm vitest run server/src/__tests__/http-log-policy.test.ts
server/src/__tests__/heartbeat-run-log.test.ts
server/src/__tests__/health.test.ts`
- `server/src/__tests__/activity-service.test.ts`,
`server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and
`server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted
on this host but the embedded Postgres harness reported
init-script/data-dir problems and skipped or failed to start, so they
are noted as environment-limited

## Risks

- Medium: this branch changes core issue/heartbeat routing and
reopen/wakeup behavior, so regressions would affect agent execution flow
rather than isolated UI polish
- Because it also updates verification infrastructure, reviewers should
pay attention to whether the new tests are asserting the right failure
modes and not just reshaping harness behavior

## Model Used

- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-04-14 13:34:52 -05:00
dotta
48704c6586 fix(export): strip project env values from company packages 2026-04-07 06:32:52 -05:00
plind-dm
6d73a8a1cb test(import): verify frontmatter role fallback preserves CEO role
Add test confirming that when a package's .paperclip.yaml extension
block omits the role field, the agent role is read from AGENTS.md
frontmatter instead of defaulting to "agent".
2026-04-03 23:24:24 +09:00
statxc
9e1ee925cd feat: support GitHub Enterprise URLs for skill and company imports 2026-04-01 20:53:41 +00:00
dotta
08bdc3d28e Handle nested imported AGENTS edge case
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 20:56:34 -05:00
dotta
e4e5b61596 Fix imported agent bundle frontmatter leakage
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 20:43:20 -05:00
dotta
159c5b4360 Preserve sidebar order in company portability
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:59 -05:00
dotta
f9927bdaaa Disable imported timer heartbeats
Prevent company imports from re-enabling scheduler heartbeats on imported agents and cover both new-company and existing-company import flows in portability tests.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:39 -05:00
dotta
c41dd2e393 Reduce portability warning fan-out
Infer portable repo metadata from local git workspaces when repoUrl is missing, and collapse repeated task workspace export warnings into a single summary per missing workspace.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:38 -05:00
dotta
2e76a2a554 Add routine support to recurring task portability
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:38 -05:00
dotta
e6df9fa078 Support GitHub shorthand refs for company import
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 08:14:51 -05:00
dotta
e3c92a20f1 Merge remote-tracking branch 'public-gh/master' into paperclip-routines
* public-gh/master: (46 commits)
  chore(lockfile): refresh pnpm-lock.yaml (#1377)
  fix: manage codex home per company by default
  Ensure agent home directories exist before use
  Handle directory entries in imported zip archives
  Fix portability import and org chart test blockers
  Fix PR verify failures after merge
  fix: address greptile follow-up feedback
  Address remaining Greptile portability feedback
  docs: clarify quickstart npx usage
  Add guarded dev restart handling
  Fix PAP-576 settings toggles and transcript default
  Add username log censor setting
  fix: use standard toggle component for permission controls
  fix: add missing setPrincipalPermission mock in portability tests
  fix: use fixed 1280x640 dimensions for org chart export image
  Adjust default CEO onboarding task copy
  fix: link Agent Company to agentcompanies.io in export README
  fix: strip agents and projects sections from COMPANY.md export body
  fix: default company export page to README.md instead of first file
  Add default agent instructions bundle
  ...

# Conflicts:
#	packages/adapters/pi-local/src/server/execute.ts
#	packages/db/src/migrations/meta/0039_snapshot.json
#	packages/db/src/migrations/meta/_journal.json
#	server/src/__tests__/agent-permissions-routes.test.ts
#	server/src/__tests__/agent-skills-routes.test.ts
#	server/src/services/company-portability.ts
#	skills/paperclip/references/company-skills.md
#	ui/src/api/agents.ts
2026-03-20 15:04:55 -05:00
dotta
553e7b6b30 Fix portability import and org chart test blockers 2026-03-20 14:06:37 -05:00
dotta
79652da520 Address remaining Greptile portability feedback 2026-03-20 08:55:10 -05:00
dotta
581a654748 fix: add missing setPrincipalPermission mock in portability tests
The access service mock was missing the setPrincipalPermission function,
causing 5 test failures in the import flow.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-20 08:30:07 -05:00
dotta
616a2bc8f9 test: fix post-sync verification regressions 2026-03-20 07:01:42 -05:00
dotta
5f2b1b63c2 Add explicit skill selection to company portability 2026-03-20 06:20:30 -05:00
dotta
531945cfe2 Add --skills flag to company export CLI and fix unsupported URL import path
- Add first-class --skills <list> option to `paperclipai company export`,
  passing through to the existing service support for skill selection
- Remove broken `type: "url"` source branch from import command — the shared
  schema and server only accept `inline | github`, so non-GitHub HTTP URLs
  now error clearly instead of failing at validation
- Export isHttpUrl/isGithubUrl helpers for testability
- Add server tests for skills-filtered export (selected + fallback)
- Add CLI tests for URL detection helpers

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-19 16:29:11 -05:00
dotta
16e221d03c Update portability tests for binary file entries
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-19 07:28:26 -05:00
dotta
7a652b8998 Add company logo portability support 2026-03-19 07:24:04 -05:00
dotta
51ca713181 Add CEO-safe company portability flows
Expose CEO-scoped import/export preview and apply routes, keep safe imports non-destructive, add export preview-first UI behavior, and document the new portability workflows.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-18 21:54:10 -05:00
dotta
87b17de0bd Preserve namespaced skill export paths
Keep readable namespaced skill export folders while replacing managed company UUID segments with the company issue prefix for export-only paths.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-18 16:54:25 -05:00
dotta
9ba47681c6 Use pretty export paths for skills
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-18 16:23:19 -05:00
Dotta
e980c2ef64 Add agent instructions bundle editing
Expose first-class instructions bundle APIs, preserve agent prompt bundles in portability flows, and replace the Agent Detail prompts tab with file-backed bundle editing while retiring bootstrap prompt UI.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-17 13:42:00 -05:00
Dotta
5890b318c4 Namespace company skill identities
Persist canonical namespaced skill keys, split adapter runtime names from skill keys, and update portability/import flows to carry the canonical identity end-to-end.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-16 18:27:20 -05:00
Dotta
8460fee380 Reduce company skill list payloads
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-16 17:45:28 -05:00
Dotta
fed94d18f3 Improve imported agent adapter selection 2026-03-16 12:17:28 -05:00
Dotta
cf8bfe8d8e Fix company import file selection
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-16 10:14:09 -05:00
Dotta
f8249af501 Stop exporting paperclipSkillSync in company packages
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-16 08:55:37 -05:00
Dotta
b2c0f3f9a5 Refine portability export behavior and skill plans 2026-03-14 18:59:26 -05:00
Dotta
1d8f514d10 Refine company package export format 2026-03-14 09:46:16 -05:00