## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Reliable execution depends on heartbeat routing, issue lifecycle
semantics, telemetry, and a fast enough local verification loop to keep
regressions visible
> - The remaining commits on this branch were mostly server/runtime
correctness fixes plus test and documentation follow-ups in that area
> - Those changes are logically separate from the UI-focused
issue-detail and workspace/navigation branches even when they touch
overlapping issue APIs
> - This pull request groups the execution reliability, heartbeat,
telemetry, and tooling changes into one standalone branch
> - The benefit is a focused review of the control-plane correctness
work, including the follow-up fix that restored the implicit
comment-reopen helpers after branch splitting
## What Changed
- Hardened issue/heartbeat execution behavior, including self-review
stage skipping, deferred mention wakes during active execution, stranded
execution recovery, active-run scoping, assignee resolution, and
blocked-to-todo wake resumption
- Reduced noisy polling/logging overhead by trimming issue run payloads,
compacting persisted run logs, silencing high-volume request logs, and
capping heartbeat-run queries in dashboard/inbox surfaces
- Expanded telemetry and status semantics with adapter/model fields on
task completion plus clearer status guidance in docs/onboarding material
- Updated test infrastructure and verification defaults with faster
route-test module isolation, cheaper default `pnpm test`, e2e isolation
from local state, and repo verification follow-ups
- Included docs/release housekeeping from the branch and added a small
follow-up commit restoring the implicit comment-reopen helpers that were
dropped during branch reconstruction
## Verification
- `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-telemetry-routes.test.ts`
- `pnpm vitest run server/src/__tests__/http-log-policy.test.ts
server/src/__tests__/heartbeat-run-log.test.ts
server/src/__tests__/health.test.ts`
- `server/src/__tests__/activity-service.test.ts`,
`server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and
`server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted
on this host but the embedded Postgres harness reported
init-script/data-dir problems and skipped or failed to start, so they
are noted as environment-limited
## Risks
- Medium: this branch changes core issue/heartbeat routing and
reopen/wakeup behavior, so regressions would affect agent execution flow
rather than isolated UI polish
- Because it also updates verification infrastructure, reviewers should
pay attention to whether the new tests are asserting the right failure
modes and not just reshaping harness behavior
## Model Used
- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
Package imports defaulted every agent's role to "agent" when the
extension block omitted the role field, even when the YAML frontmatter
contained the correct role (e.g. "ceo"). Read from frontmatter as a
fallback before the "agent" default so imported CEOs retain their role.
Closes#1990
Add @deprecated JSDoc and inline comments to bootstrapPromptTemplate
references in agent-instructions and company-portability services.
This field is superseded by the managed instructions bundle system.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Prevent company imports from re-enabling scheduler heartbeats on imported agents and cover both new-company and existing-company import flows in portability tests.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Infer portable repo metadata from local git workspaces when repoUrl is missing, and collapse repeated task workspace export warnings into a single summary per missing workspace.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
COMPANY.md now contains only the company description in frontmatter,
without the agents list and projects list that were previously rendered
in the markdown body. The README.md already contains this info.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Drop "api" from the trigger kind dropdown and disable the "webhook"
option with a "COMING SOON" label until it's ready.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
When skills are imported via skills.sh URLs or key-style imports
(org/repo/skill), the stored sourceType is now "skills_sh" with the
original skills.sh URL as sourceLocator, instead of "github" with the
resolved GitHub URL.
- Add "skills_sh" to CompanySkillSourceType and CompanySkillSourceBadge
- Track originalSkillsShUrl in parseSkillImportSourceInput
- Override sourceType/sourceLocator in importFromSource for skills.sh
- Handle skills_sh in key derivation, source info, update checks,
file reads, portability export, and UI badge rendering
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Filter out projects with archivedAt set when building the export bundle,
so archived projects never appear in the exported package. Adds a warning
when archived projects are skipped.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Keep readable namespaced skill export folders while replacing managed company UUID segments with the company issue prefix for export-only paths.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- Org chart now uses a Mermaid flowchart (graph TD) instead of a
standalone SVG file — GitHub and the preview both render it natively
- Removed SVG generation code, layout algorithm, and image resolution
- Removed images/org-chart.svg from export output
- Simplified ExportPreviewPane (no more SVG/data-URI handling)
- Both server and client README generators produce Mermaid diagrams
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Adds auto-generated README.md with company summary, agent table, project
list, and getting-started instructions. Includes an SVG org chart image
in images/org-chart.svg using the same layout algorithm as the UI.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
When importing a company, users can now choose the adapter type for each
imported agent. Defaults to the current company CEO's adapter type (or
claude_local if none). Includes an expandable "configure adapter" section
per agent that renders the adapter-specific config fields.
- Added adapterOverrides to import request schema and types
- Built AdapterPickerList UI component in CompanyImport.tsx
- Backend applies adapter overrides when creating/updating agents
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- Remove the collision strategy dropdown; always default to "rename"
- Add a "Conflicts to resolve" chores list above the package file tree
showing each collision with editable rename fields (oldname → newname)
- Default rename uses source folder prefix (e.g. gstack-CEO)
- Per-item "skip" button that syncs with file tree checkboxes
- COMPANY.md defaults to skip when importing to an existing company
- Add nameOverrides support to API types and server so user-edited
renames are passed through to the import
Co-Authored-By: Paperclip <noreply@paperclip.ing>
We don't support regular updates to agents from GitHub sources yet,
so the "not pinned to a commit SHA" warning is misleading and unnecessary.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
When importing into an existing company, files with "update" action (conflicts)
now have their parent directories auto-expanded so users immediately see what
will be overwritten. Additionally, server-side warnings are generated for any
agent or project that will be overwritten by the import.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Move all tasks to top-level tasks/ folder (no longer nested under
projects/slug/tasks/). The project slug is still in the frontmatter
for association.
- Search auto-expands parent dirs of matched files so matches are
always visible in the tree
- Restores previous expansion state when search is cleared
- All files already loaded in memory — search works across everything
with no pagination limit
Co-Authored-By: Paperclip <noreply@paperclip.ing>
