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317 commits
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641eb44949
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[codex] Harden create-agent skill governance (#4422)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Hiring agents is a governance-sensitive workflow because it grants roles, adapter config, skills, and execution capability > - The create-agent skill needs explicit templates and review guidance so hires are auditable and not over-permissioned > - Skill sync also needs to recognize bundled Paperclip skills consistently for Codex local agents > - This pull request expands create-agent role templates, adds a security-engineer template, and documents capability/secret-handling review requirements > - The benefit is safer, more repeatable agent creation with clearer approval payloads and less permission sprawl ## What Changed - Expanded `paperclip-create-agent` guidance for template selection, adjacent-template drafting, and role-specific review bars. - Added a Security Engineer agent template and collaboration/safety sections for Coder, QA, and UX Designer templates. - Hardened draft-review guidance around desired skills, external-system access, secrets, and confidential advisory handling. - Updated LLM agent-configuration guidance to point hiring workflows at the create-agent skill. - Added tests for bundled skill sync, create-agent skill injection, hire approval payloads, and LLM route guidance. ## Verification - `pnpm exec vitest run server/src/__tests__/agent-skills-routes.test.ts server/src/__tests__/codex-local-skill-injection.test.ts server/src/__tests__/codex-local-skill-sync.test.ts server/src/__tests__/llms-routes.test.ts server/src/__tests__/paperclip-skill-utils.test.ts --config server/vitest.config.ts` passed: 5 files, 23 tests. - `git diff --check public-gh/master..pap-2228-create-agent-governance -- . ':(exclude)ui/storybook-static'` passed. - Confirmed this PR does not include `pnpm-lock.yaml`. ## Risks - Low-to-medium risk: this primarily changes skills/docs and tests, but it affects future hiring guidance and approval expectations. - Reviewers should check whether the new Security Engineer template is too broad for default company installs. - No database migrations. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, with shell, git, Paperclip API, and GitHub CLI tool use in the local Paperclip workspace. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Note: screenshot checklist item is not applicable; this PR changes skills, docs, and server tests. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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8f1cd0474f
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[codex] Improve transient recovery and Codex model refresh (#4383)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Adapter execution and retry classification decide whether agent work pauses, retries, or recovers automatically > - Transient provider failures need to be classified precisely so Paperclip does not convert retryable upstream conditions into false hard failures > - At the same time, operators need an up-to-date model list for Codex-backed agents and prompts should nudge agents toward targeted verification instead of repo-wide sweeps > - This pull request tightens transient recovery classification for Claude and Codex, updates the agent prompt guidance, and adds Codex model refresh support end-to-end > - The benefit is better automatic retry behavior plus fresher operator-facing model configuration ## What Changed - added Codex usage-limit retry-window parsing and Claude extra-usage transient classification - normalized the heartbeat transient-recovery contract across adapter executions and heartbeat scheduling - documented that deferred comment wakes only reopen completed issues for human/comment-reopen interactions, while system follow-ups leave closed work closed - updated adapter-utils prompt guidance to prefer targeted verification - added Codex model refresh support in the server route, registry, shared types, and agent config form - added adapter/server tests covering the new parsing, retry scheduling, and model-refresh behavior ## Verification - `pnpm exec vitest run --project @paperclipai/adapter-utils packages/adapter-utils/src/server-utils.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-claude-local packages/adapters/claude-local/src/server/parse.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-codex-local packages/adapters/codex-local/src/server/parse.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/adapter-model-refresh-routes.test.ts server/src/__tests__/adapter-models.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/codex-local-execute.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/heartbeat-retry-scheduling.test.ts` ## Risks - Moderate behavior risk: retry classification affects whether runs auto-recover or block, so mistakes here could either suppress needed retries or over-retry real failures - Low workflow risk: deferred comment wake reopening is intentionally scoped to human/comment-reopen interactions so system follow-ups do not revive completed issues unexpectedly > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex GPT-5-based coding agent with tool use and code execution in the Codex CLI environment ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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7ad225a198
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[codex] Improve issue thread review flow (#4381)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Issue detail is where operators coordinate review, approvals, and follow-up work with active runs > - That thread UI needs to surface blockers, descendants, review handoffs, and reply ergonomics clearly enough for humans to guide agent work > - Several small gaps in the issue-thread flow were making review and navigation clunkier than necessary > - This pull request improves the reply composer, descendant/blocker presentation, interaction folding, and review-request handoff plumbing together as one cohesive issue-thread workflow slice > - The benefit is a cleaner operator review loop without changing the broader task model ## What Changed - restored and refined the floating reply composer behavior in the issue thread - folded expired confirmation interactions and improved post-submit thread scrolling behavior - surfaced descendant issue context and inline blocker/paused-assignee notices on the issue detail view - tightened large-board first paint behavior in `IssuesList` - added loose review-request handoffs through the issue execution-policy/update path and covered them with tests ## Verification - `pnpm vitest run ui/src/pages/IssueDetail.test.tsx` - `pnpm vitest run server/src/__tests__/issues-service.test.ts server/src/__tests__/issue-execution-policy.test.ts` - `pnpm exec vitest run --project @paperclipai/ui ui/src/components/IssueChatThread.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/IssuesList.test.tsx ui/src/lib/issue-tree.test.ts ui/src/api/issues.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-utils packages/adapter-utils/src/server-utils.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/issue-comment-reopen-routes.test.ts -t "coerces executor handoff patches into workflow-controlled review wakes|wakes the return assignee with execution_changes_requested"` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/issue-execution-policy.test.ts server/src/__tests__/issues-service.test.ts` ## Visual Evidence - UI layout changes are covered by the focused issue-thread component and issue-detail tests listed above. Browser screenshots were not attachable from this automated greploop environment, so reviewers should use the running preview for final visual confirmation. ## Risks - Moderate UI-flow risk: these changes touch the issue detail experience in multiple spots, so regressions would most likely show up as thread-layout quirks or incorrect review-handoff behavior > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex GPT-5-based coding agent with tool use and code execution in the Codex CLI environment ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots or documented the visual verification path - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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e4995bbb1c
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Add SSH environment support (#4358)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The environments subsystem already models execution environments, but before this branch there was no end-to-end SSH-backed runtime path for agents to actually run work against a remote box > - That meant agents could be configured around environment concepts without a reliable way to execute adapter sessions remotely, sync workspace state, and preserve run context across supported adapters > - We also need environment selection to participate in normal Paperclip control-plane behavior: agent defaults, project/issue selection, route validation, and environment probing > - Because this capability is still experimental, the UI surface should be easy to hide and easy to remove later without undoing the underlying implementation > - This pull request adds SSH environment execution support across the runtime, adapters, routes, schema, and tests, then puts the visible environment-management UI behind an experimental flag > - The benefit is that we can validate real SSH-backed agent execution now while keeping the user-facing controls safely gated until the feature is ready to come out of experimentation ## What Changed - Added SSH-backed execution target support in the shared adapter runtime, including remote workspace preparation, skill/runtime asset sync, remote session handling, and workspace restore behavior after runs. - Added SSH execution coverage for supported local adapters, plus remote execution tests across Claude, Codex, Cursor, Gemini, OpenCode, and Pi. - Added environment selection and environment-management backend support needed for SSH execution, including route/service work, validation, probing, and agent default environment persistence. - Added CLI support for SSH environment lab verification and updated related docs/tests. - Added the `enableEnvironments` experimental flag and gated the environment UI behind it on company settings, agent configuration, and project configuration surfaces. ## Verification - `pnpm exec vitest run packages/adapters/claude-local/src/server/execute.remote.test.ts packages/adapters/cursor-local/src/server/execute.remote.test.ts packages/adapters/gemini-local/src/server/execute.remote.test.ts packages/adapters/opencode-local/src/server/execute.remote.test.ts packages/adapters/pi-local/src/server/execute.remote.test.ts` - `pnpm exec vitest run server/src/__tests__/environment-routes.test.ts` - `pnpm exec vitest run server/src/__tests__/instance-settings-routes.test.ts` - `pnpm exec vitest run ui/src/lib/new-agent-hire-payload.test.ts ui/src/lib/new-agent-runtime-config.test.ts` - `pnpm -r typecheck` - `pnpm build` - Manual verification on a branch-local dev server: - enabled the experimental flag - created an SSH environment - created a Linux Claude agent using that environment - confirmed a run executed on the Linux box and synced workspace changes back ## Risks - Medium: this touches runtime execution flow across multiple adapters, so regressions would likely show up in remote session setup, workspace sync, or environment selection precedence. - The UI flag reduces exposure, but the underlying runtime and route changes are still substantial and rely on migration correctness. - The change set is broad across adapters, control-plane services, migrations, and UI gating, so review should pay close attention to environment-selection precedence and remote workspace lifecycle behavior. ## Model Used - OpenAI Codex via Paperclip's local Codex adapter, GPT-5-class coding model with tool use and code execution in the local repo workspace. The local adapter does not surface a more specific public model version string in this branch workflow. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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f98c348e2b
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[codex] Add issue subtree pause, cancel, and restore controls (#4332)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - This branch extends the issue control-plane so board operators can pause, cancel, and later restore whole issue subtrees while keeping descendant execution and wake behavior coherent. > - That required new hold state in the database, shared contracts, server routes/services, and issue detail UI controls so subtree actions are durable and auditable instead of ad hoc. > - While this branch was in flight, `master` advanced with new environment lifecycle work, including a new `0065_environments` migration. > - Before opening the PR, this branch had to be rebased onto `paperclipai/paperclip:master` without losing the existing subtree-control work or leaving conflicting migration numbering behind. > - This pull request rebases the subtree pause/cancel/restore feature cleanly onto current `master`, renumbers the hold migration to `0066_issue_tree_holds`, and preserves the full branch diff in a single PR. > - The benefit is that reviewers get one clean, mergeable PR for the subtree-control feature instead of stale branch history with migration conflicts. ## What Changed - Added durable issue subtree hold data structures, shared API/types/validators, server routes/services, and UI flows for subtree pause, cancel, and restore operations. - Added server and UI coverage for subtree previewing, hold creation/release, dependency-aware scheduling under holds, and issue detail subtree controls. - Rebased the branch onto current `paperclipai/paperclip:master` and renumbered the branch migration from `0065_issue_tree_holds` to `0066_issue_tree_holds` so it no longer conflicts with upstream `0065_environments`. - Added a small follow-up commit that makes restore requests return `200 OK` explicitly while keeping pause/cancel hold creation at `201 Created`, and updated the route test to match that contract. ## Verification - `pnpm --filter @paperclipai/db typecheck` - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` - `cd server && pnpm exec vitest run src/__tests__/issue-tree-control-routes.test.ts src/__tests__/issue-tree-control-service.test.ts src/__tests__/issue-tree-control-service-unit.test.ts src/__tests__/heartbeat-dependency-scheduling.test.ts` - `cd ui && pnpm exec vitest run src/components/IssueChatThread.test.tsx src/pages/IssueDetail.test.tsx` ## Risks - This is a broad cross-layer change touching DB/schema, shared contracts, server orchestration, and UI; regressions are most likely around subtree status restoration or wake suppression/resume edge cases. - The migration was renumbered during PR prep to avoid the new upstream `0065_environments` conflict. Reviewers should confirm the final `0066_issue_tree_holds` ordering is the only hold-related migration that lands. - The issue-tree restore endpoint now responds with `200` instead of relying on implicit behavior, which is semantically better for a restore operation but still changes an API detail that clients or tests could have assumed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent in the Paperclip Codex runtime (GPT-5-class tool-using coding model; exact deployment ID/context window is not exposed inside this session). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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3d15798c22
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fix(adapters/routes): apply resolveExternalAdapterRegistration on hot-install (#4324)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The external adapter plugin system (#2218) lets adapters ship as npm modules loaded via `server/src/adapters/plugin-loader.ts`; since #4296 merged, each `ServerAdapterModule` can declare `sessionManagement` (`supportsSessionResume`, `nativeContextManagement`, `defaultSessionCompaction`) and have it preserved through the init-time load via the new `resolveExternalAdapterRegistration` helper > - #4296 fixed the init-time IIFE path at `server/src/adapters/registry.ts:363-369` but noted that the hot-install path at `server/src/routes/adapters.ts:174 registerWithSessionManagement` still unconditionally overwrites module-provided `sessionManagement` during `POST /api/adapters/install` > - Practical impact today: an external adapter installed via the API needs a Paperclip restart before its declared `sessionManagement` takes effect — the IIFE runs on next boot and preserves it, but until then the hot-install overwrite wins > - This PR closes that parity gap: `registerWithSessionManagement` delegates to the same `resolveExternalAdapterRegistration` helper introduced by #4296, unifying both load paths behind one resolver > - The benefit is consistent behaviour between cold-start and hot-install: no "install then restart" ritual; declared `sessionManagement` on an external module is honoured the moment `POST /api/adapters/install` returns 201 ## What Changed - `server/src/routes/adapters.ts`: `registerWithSessionManagement` delegates to the exported `resolveExternalAdapterRegistration` helper (added in #4296). Honours module-provided `sessionManagement` first, falls back to host registry lookup, defaults `undefined`. Updated the section comment to document the parity-with-IIFE intent. - `server/src/routes/adapters.ts`: dropped the now-unused `getAdapterSessionManagement` import. - `server/src/adapters/registry.ts`: updated the JSDoc on `resolveExternalAdapterRegistration` — previously said "Exported for unit tests; runtime callers use the IIFE below", now says the helper is used by both the init-time IIFE and the hot-install path in `routes/adapters.ts`. Addresses Greptile C1. - `server/src/__tests__/adapter-routes.test.ts`: new integration test — installs a mocked external adapter module carrying a non-trivial `sessionManagement` declaration and asserts `findServerAdapter(type).sessionManagement` preserves it after `POST /api/adapters/install` returns 201. - `server/src/__tests__/adapter-routes.test.ts`: added `findServerAdapter` to the shared test-scope variable set so the new test can inspect post-install registry state. ## Verification Targeted test runs from a clean tree on `fix/external-session-management-hot-install` (rebased onto current `upstream/master` now that #4296 has merged): - `pnpm test server/src/__tests__/adapter-routes.test.ts` — 6 passed (new test + 5 pre-existing) - `pnpm test server/src/__tests__/adapter-registry.test.ts` — 15 passed (ensures the IIFE path from #4296 continues to behave correctly) - `pnpm -w run test` full workspace suite — 1923 passed / 1 skipped (unrelated skip) End-to-end smoke on file: [`@superbiche/cline-paperclip-adapter@0.1.1`](https://www.npmjs.com/package/@superbiche/cline-paperclip-adapter) and [`@superbiche/qwen-paperclip-adapter@0.1.1`](https://www.npmjs.com/package/@superbiche/qwen-paperclip-adapter), both public on npm, both declare `sessionManagement`. With this PR in place, the "restart after install" step disappears — the declared compaction policy is active immediately after the install response. ## Risks - Low risk. The change replaces an inline mutation with a call to a helper that already has dedicated unit coverage (#4296 added three tests for `resolveExternalAdapterRegistration` covering module-provided, registry-fallback, and undefined paths). Behaviour is a strict superset of the prior path — externals that did not declare `sessionManagement` continue to get the hardcoded-registry lookup; externals that did declare it now have those values preserved instead of overwritten. - No migration impact. The stored plugin records (`~/.paperclip/adapter-plugins.json`) are unchanged. Existing hot-installed adapters behave correctly before and after. - No behavioural change for builtin adapters; they hit `registerServerAdapter` directly and never flow through `registerWithSessionManagement`. ## Model Used - Provider and model: Claude (Anthropic) via Claude Code - Model ID: `claude-opus-4-7` (1M context) - Reasoning mode: standard (no extended thinking on this PR) - Tool use: yes — file edits, subprocess invocations for builds/tests/git via the Claude Code harness ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (N/A — server-only change) - [x] I have updated relevant documentation to reflect my changes (the JSDoc on `resolveExternalAdapterRegistration` and the section comment above `registerWithSessionManagement` now document the parity-with-IIFE intent) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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b69b563aa8
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[codex] Fix stale issue execution run locks (#4258)
## Thinking Path > - Paperclip is a control plane for AI-agent companies, so issue checkout and execution ownership are core safety contracts. > - The affected subsystem is the issue service and route layer that gates agent writes by `checkoutRunId` and `executionRunId`. > - PAP-1982 exposed a stale-lock failure mode where a terminal heartbeat run could leave `executionRunId` pinned after checkout ownership had moved or been cleared. > - That stale execution lock could reject legitimate PATCH/comment/release requests from the rightful assignee after a harness restart. > - This pull request centralizes terminal-run cleanup, applies it before ownership-gated writes, and adds a board-only recovery endpoint for operator intervention. > - The benefit is that crashed or terminal runs no longer strand issues behind stale execution locks, while live execution locks still block conflicting writes. ## What Changed - Added `issueService.clearExecutionRunIfTerminal()` to atomically lock the issue/run rows and clear terminal or missing execution-run locks. - Reused stale execution-lock cleanup from checkout, `assertCheckoutOwner()`, and `release()`. - Allowed the same assigned agent/current run to adopt an unowned `in_progress` checkout after stale execution-lock cleanup. - Updated release to clear `executionRunId`, `executionAgentNameKey`, and `executionLockedAt`. - Added board-only `POST /api/issues/:id/admin/force-release` with company access checks, optional `clearAssignee=true`, and `issue.admin_force_release` audit logging. - Added embedded Postgres service tests and route integration tests for stale-lock recovery, release behavior, and admin force-release authorization/audit behavior. - Documented the new force-release API in `doc/SPEC-implementation.md`. ## Verification - `pnpm vitest run server/src/__tests__/issues-service.test.ts server/src/__tests__/issue-stale-execution-lock-routes.test.ts` passed. - `pnpm vitest run server/src/__tests__/issue-stale-execution-lock-routes.test.ts server/src/__tests__/approval-routes-idempotency.test.ts server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` passed. - `pnpm -r typecheck` passed. - `pnpm build` passed. - `git diff --check` passed. - `pnpm lint` could not run because this repo has no `lint` command. - Full `pnpm test:run` completed with 4 failures in existing route suites: `approval-routes-idempotency.test.ts` (2), `issue-comment-reopen-routes.test.ts` (1), and `issue-telemetry-routes.test.ts` (1). Those same files pass when run isolated and when run together with the new stale-lock route test, so this appears to be a whole-suite ordering/mock-isolation issue outside this patch path. ## Risks - Medium: this changes ownership-gated write behavior. The new adoption path is limited to the current run, the current assignee, `in_progress` issues, and rows with no checkout owner after terminal-lock cleanup. - Low: the admin force-release endpoint is board-only and company-scoped, but misuse can intentionally clear a live lock. It writes an audit event with prior lock IDs. - No schema or migration changes. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent (`gpt-5`), agentic coding with terminal/tool use and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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a957394420
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[codex] Add structured issue-thread interactions (#4244)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Operators supervise that work through issues, comments, approvals, and the board UI. > - Some agent proposals need structured board/user decisions, not hidden markdown conventions or heavyweight governed approvals. > - Issue-thread interactions already provide a natural thread-native surface for proposed tasks and questions. > - This pull request extends that surface with request confirmations, richer interaction cards, and agent/plugin/MCP helpers. > - The benefit is that plan approvals and yes/no decisions become explicit, auditable, and resumable without losing the single-issue workflow. ## What Changed - Added persisted issue-thread interactions for suggested tasks, structured questions, and request confirmations. - Added board UI cards for interaction review, selection, question answers, and accept/reject confirmation flows. - Added MCP and plugin SDK helpers for creating interaction cards from agents/plugins. - Updated agent wake instructions, onboarding assets, Paperclip skill docs, and public docs to prefer structured confirmations for issue-scoped decisions. - Rebased the branch onto `public-gh/master` and renumbered branch migrations to `0063` and `0064`; the idempotency migration uses `ADD COLUMN IF NOT EXISTS` for old branch users. ## Verification - `git diff --check public-gh/master..HEAD` - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts packages/mcp-server/src/tools.test.ts packages/shared/src/issue-thread-interactions.test.ts ui/src/lib/issue-thread-interactions.test.ts ui/src/lib/issue-chat-messages.test.ts ui/src/components/IssueThreadInteractionCard.test.tsx ui/src/components/IssueChatThread.test.tsx server/src/__tests__/issue-thread-interaction-routes.test.ts server/src/__tests__/issue-thread-interactions-service.test.ts server/src/services/issue-thread-interactions.test.ts` -> 9 files / 79 tests passed - `pnpm -r typecheck` -> passed, including `packages/db` migration numbering check ## Risks - Medium: this adds a new issue-thread interaction model across db/shared/server/ui/plugin surfaces. - Migration risk is reduced by placing this branch after current master migrations (`0063`, `0064`) and making the idempotency column add idempotent for users who applied the old branch numbering. - UI interaction behavior is covered by component tests, but this PR does not include browser screenshots. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-class coding agent runtime. Exact model ID and context window are not exposed in this Paperclip run; tool use and local shell/code execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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bcbbb41a4b
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[codex] Harden heartbeat runtime cleanup (#4233)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The heartbeat runtime is the control-plane path that turns issue assignments into agent runs and recovers after process exits. > - Several edge cases could leave high-volume reads unbounded, stale runtime services visible, blocked dependency wakes too eager, or terminal adapter processes still around after output finished. > - These problems make operator views noisy and make long-running agent work less predictable. > - This pull request tightens the runtime/read paths and adds focused regression coverage. > - The benefit is safer heartbeat execution and cleaner runtime state without changing the public task model. ## What Changed - Bounded high-volume issue/log reads in runtime code paths. - Hardened heartbeat handling for blocked dependency wakes and terminal run cleanup. - Added adapter process cleanup coverage for terminal output cases. - Added workspace runtime control tests for stale command matching and stopped services. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/heartbeat-dependency-scheduling.test.ts ui/src/components/WorkspaceRuntimeControls.test.tsx` ## Risks - Medium risk because heartbeat cleanup and runtime filtering affect active agent execution paths. - No migrations. > Checked `ROADMAP.md`; this is runtime hardening and bug-fix work, not a new roadmap-level feature. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled repository editing and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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09d0678840
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[codex] Harden heartbeat scheduling and runtime controls (#4223)
## Thinking Path > - Paperclip orchestrates AI agents through issue checkout, heartbeat runs, routines, and auditable control-plane state > - The runtime path has to recover from lost local processes, transient adapter failures, blocked dependencies, and routine coalescing without stranding work > - The existing branch carried several reliability fixes across heartbeat scheduling, issue runtime controls, routine dispatch, and operator-facing run state > - These changes belong together because they share backend contracts, migrations, and runtime status semantics > - This pull request groups the control-plane/runtime slice so it can merge independently from board UI polish and adapter sandbox work > - The benefit is safer heartbeat recovery, clearer runtime controls, and more predictable recurring execution behavior ## What Changed - Adds bounded heartbeat retry scheduling, scheduled retry state, and Codex transient failure recovery handling. - Tightens heartbeat process recovery, blocker wake behavior, issue comment wake handling, routine dispatch coalescing, and activity/dashboard bounds. - Adds runtime-control MCP tools and Paperclip skill docs for issue workspace runtime management. - Adds migrations `0061_lively_thor_girl.sql` and `0062_routine_run_dispatch_fingerprint.sql`. - Surfaces retry state in run ledger/agent UI and keeps related shared types synchronized. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-retry-scheduling.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/routines-service.test.ts` - `pnpm exec vitest run src/tools.test.ts` from `packages/mcp-server` ## Risks - Medium risk: this touches heartbeat recovery and routine dispatch, which are central execution paths. - Migration order matters if split branches land out of order: merge this PR before branches that assume the new runtime/routine fields. - Runtime retry behavior should be watched in CI and in local operator smoke tests because it changes how transient failures are resumed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent runtime, shell/git tool use enabled. Exact hosted model build and context window are not exposed in this Paperclip heartbeat environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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ab9051b595
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Add first-class issue references (#4214)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Operators and agents coordinate through company-scoped issues, comments, documents, and task relationships. > - Issue text can mention other tickets, but those references were previously plain markdown/text without durable relationship data. > - That made it harder to understand related work, surface backlinks, and keep cross-ticket context visible in the board. > - This pull request adds first-class issue reference extraction, storage, API responses, and UI surfaces. > - The benefit is that issue references become queryable, navigable, and visible without relying on ad hoc text scanning. ## What Changed - Added shared issue-reference parsing utilities and exported reference-related types/constants. - Added an `issue_reference_mentions` table, idempotent migration DDL, schema exports, and database documentation. - Added server-side issue reference services, route integration, activity summaries, and a backfill command for existing issue content. - Added UI reference pills, related-work panels, markdown/editor mention handling, and issue detail/property rendering updates. - Added focused shared, server, and UI tests for parsing, persistence, display, and related-work behavior. - Rebased `PAP-735-first-class-task-references` cleanly onto `public-gh/master`; no `pnpm-lock.yaml` changes are included. ## Verification - `pnpm -r typecheck` - `pnpm test:run packages/shared/src/issue-references.test.ts server/src/__tests__/issue-references-service.test.ts ui/src/components/IssueRelatedWorkPanel.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/MarkdownBody.test.tsx` ## Risks - Medium risk because this adds a new issue-reference persistence path that touches shared parsing, database schema, server routes, and UI rendering. - Migration risk is mitigated by `CREATE TABLE IF NOT EXISTS`, guarded foreign-key creation, and `CREATE INDEX IF NOT EXISTS` statements so users who have applied an older local version of the numbered migration can re-run safely. - UI risk is limited by focused component coverage, but reviewers should still manually inspect issue detail pages containing ticket references before merge. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-using shell workflow with repository inspection, git rebase/push, typecheck, and focused Vitest verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: dotta <dotta@example.com> Co-authored-by: Paperclip <noreply@paperclip.ing> |
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1266954a4e
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[codex] Make heartbeat scheduling blocker-aware (#4157)
## Thinking Path > - Paperclip orchestrates AI agents through issue-driven heartbeats, checkouts, and wake scheduling. > - This change sits in the server heartbeat and issue services that decide which queued runs are allowed to start. > - Before this branch, queued heartbeats could be selected even when their issue still had unresolved blocker relationships. > - That let blocked descendant work compete with actually-ready work and risked auto-checking out issues that were not dependency-ready. > - This pull request teaches the scheduler and checkout path to consult issue dependency readiness before claiming queued runs. > - It also exposes dependency readiness in the agent inbox so agents can see which assigned issues are still blocked. > - The result is that heartbeat execution follows the DAG of blocked dependencies instead of waking work out of order. ## What Changed - Added `IssueDependencyReadiness` helpers to `issueService`, including unresolved blocker lookup for single issues and bulk issue lists. - Prevented issue checkout and `in_progress` transitions when unresolved blockers still exist. - Made heartbeat queued-run claiming and prioritization dependency-aware so ready work starts before blocked descendants. - Included dependency readiness fields in `/api/agents/me/inbox-lite` for agent heartbeat selection. - Added regression coverage for dependency-aware heartbeat promotion and issue-service participation filtering. ## Verification - `pnpm run preflight:workspace-links` - `pnpm exec vitest run server/src/__tests__/heartbeat-dependency-scheduling.test.ts server/src/__tests__/issues-service.test.ts` - On this host, the Vitest command passed, but the embedded-Postgres portions of those files were skipped because `@embedded-postgres/darwin-x64` is not installed. ## Risks - Scheduler ordering now prefers dependency-ready runs, so any hidden assumptions about strict FIFO ordering could surface in edge cases. - The new guardrails reject checkout or `in_progress` transitions for blocked issues; callers depending on the old permissive behavior would now get `422` errors. - Local verification did not execute the embedded-Postgres integration paths on this macOS host because the platform binary package was missing. > I checked `ROADMAP.md`; this is a targeted execution/scheduling fix and does not duplicate planned roadmap feature work. ## Model Used - OpenAI Codex via the Paperclip `codex_local` adapter in this workspace. Exact backend model ID is not surfaced in the runtime here; tool-enabled coding agent with terminal execution and repository editing capabilities. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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7a329fb8bb
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Harden API route authorization boundaries (#4122)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The REST API is the control-plane boundary for companies, agents, plugins, adapters, costs, invites, and issue mutations. > - Several routes still relied on broad board or company access checks without consistently enforcing the narrower actor, company, and active-checkout boundaries those operations require. > - That can allow agents or non-admin users to mutate sensitive resources outside the intended governance path. > - This pull request hardens the route authorization layer and adds regression coverage for the audited API surfaces. > - The benefit is tighter multi-company isolation, safer plugin and adapter administration, and stronger enforcement of active issue ownership. ## What Changed - Added route-level authorization checks for budgets, plugin administration/scoped routes, adapter management, company import/export, direct agent creation, invite test resolution, and issue mutation/write surfaces. - Enforced active checkout ownership for agent-authenticated issue mutations, while preserving explicit management overrides for permitted managers. - Restricted sensitive adapter and plugin management operations to instance-admin or properly scoped actors. - Tightened company portability and invite probing routes so agents cannot cross company boundaries. - Updated access constants and the Company Access UI copy for the new active-checkout management grant. - Added focused regression tests covering cross-company denial, agent self-mutation denial, admin-only operations, and active checkout ownership. - Rebased the branch onto `public-gh/master` and fixed validation fallout from the rebase: heartbeat-context route ordering and a company import/export e2e fixture that now opts out of direct-hire approval before using direct agent creation. - Updated onboarding and signoff e2e setup to create seed agents through `/agent-hires` plus board approval, so they remain compatible with the approval-gated new-agent default. - Addressed Greptile feedback by removing a duplicate company export API alias, avoiding N+1 reporting-chain lookups in active-checkout override checks, allowing agent mutations on unassigned `in_progress` issues, and blocking NAT64 invite-probe targets. ## Verification - `pnpm exec vitest run server/src/__tests__/issues-goal-context-routes.test.ts cli/src/__tests__/company-import-export-e2e.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts server/src/__tests__/adapter-routes-authz.test.ts server/src/__tests__/agent-permissions-routes.test.ts server/src/__tests__/company-portability-routes.test.ts server/src/__tests__/costs-service.test.ts server/src/__tests__/invite-test-resolution-route.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/agent-adapter-validation-routes.test.ts` - `pnpm exec vitest run server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts` - `pnpm exec vitest run server/src/__tests__/invite-test-resolution-route.test.ts` - `pnpm -r typecheck` - `pnpm --filter server typecheck` - `pnpm --filter ui typecheck` - `pnpm build` - `pnpm test:e2e -- tests/e2e/onboarding.spec.ts tests/e2e/signoff-policy.spec.ts` - `pnpm test:e2e -- tests/e2e/signoff-policy.spec.ts` - `pnpm test:run` was also run. It failed under default full-suite parallelism with two order-dependent failures in `plugin-routes-authz.test.ts` and `routines-e2e.test.ts`; both files passed when rerun directly together with `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts server/src/__tests__/routines-e2e.test.ts`. ## Risks - Medium risk: this changes authorization behavior across multiple sensitive API surfaces, so callers that depended on broad board/company access may now receive `403` or `409` until they use the correct governance path. - Direct agent creation now respects the company-level board-approval requirement; integrations that need pending hires should use `/api/companies/:companyId/agent-hires`. - Active in-progress issue mutations now require checkout ownership or an explicit management override, which may reveal workflow assumptions in older automation. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5 coding agent, tool-using workflow with local shell, Git, GitHub CLI, and repository tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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549ef11c14
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[codex] Respect manual workspace runtime controls (#4125)
## Thinking Path > - Paperclip orchestrates AI agents inside execution and project workspaces > - Workspace runtime services can be controlled manually by operators and reused by agent runs > - Manual start/stop state was not preserved consistently across workspace policies and routine launches > - Routine launches also needed branch/workspace variables to default from the selected workspace context > - This pull request makes runtime policy state explicit, preserves manual control, and auto-fills routine branch variables from workspace data > - The benefit is less surprising workspace service behavior and fewer manual inputs when running workspace-scoped routines ## What Changed - Added runtime-state handling for manual workspace control across execution and project workspace validators, routes, and services. - Updated heartbeat/runtime startup behavior so manually stopped services are respected. - Auto-filled routine workspace branch variables from available workspace context. - Added focused server and UI tests for workspace runtime and routine variable behavior. - Removed muted gray background styling from workspace pages and cards for a cleaner workspace UI. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `pnpm exec vitest run server/src/__tests__/routines-service.test.ts server/src/__tests__/workspace-runtime.test.ts ui/src/components/RoutineRunVariablesDialog.test.tsx` - Result: 55 tests passed, 21 skipped. The embedded Postgres routines tests skipped on this host with the existing PGlite/Postgres init warning; workspace-runtime and UI tests passed. ## Risks - Medium risk: this touches runtime service start/stop policy and heartbeat launch behavior. - The focused tests cover manual runtime state, routine variables, and workspace runtime reuse paths. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, tool-enabled local shell and GitHub workflow, exact runtime context window not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots, or documented why targeted component/service verification is sufficient here - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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9c6f551595
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[codex] Add plugin orchestration host APIs (#4114)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The plugin system is the extension path for optional capabilities that should not require core product changes for every integration. > - Plugins need scoped host APIs for issue orchestration, documents, wakeups, summaries, activity attribution, and isolated database state. > - Without those host APIs, richer plugins either cannot coordinate Paperclip work safely or need privileged core-side special cases. > - This pull request adds the plugin orchestration host surface, scoped route dispatch, a database namespace layer, and a smoke plugin that exercises the contract. > - The benefit is a broader plugin API that remains company-scoped, auditable, and covered by tests. ## What Changed - Added plugin orchestration host APIs for issue creation, document access, wakeups, summaries, plugin-origin activity, and scoped API route dispatch. - Added plugin database namespace tables, schema exports, migration checks, and idempotent replay coverage under migration `0059_plugin_database_namespaces`. - Added shared plugin route/API types and validators used by server and SDK boundaries. - Expanded plugin SDK types, protocol helpers, worker RPC host behavior, and testing utilities for orchestration flows. - Added the `plugin-orchestration-smoke-example` package to exercise scoped routes, restricted database namespaces, issue orchestration, documents, wakeups, summaries, and UI status surfaces. - Kept the new orchestration smoke fixture out of the root pnpm workspace importer so this PR preserves the repository policy of not committing `pnpm-lock.yaml`. - Updated plugin docs and database docs for the new orchestration and database namespace surfaces. - Rebased the branch onto `public-gh/master`, resolved conflicts, and removed `pnpm-lock.yaml` from the final PR diff. ## Verification - `pnpm install --frozen-lockfile` - `pnpm --filter @paperclipai/db typecheck` - `pnpm exec vitest run packages/db/src/client.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-database.test.ts server/src/__tests__/plugin-orchestration-apis.test.ts server/src/__tests__/plugin-routes-authz.test.ts server/src/__tests__/plugin-scoped-api-routes.test.ts server/src/__tests__/plugin-sdk-orchestration-contract.test.ts` - From `packages/plugins/examples/plugin-orchestration-smoke-example`: `pnpm exec vitest run --config ./vitest.config.ts` - `pnpm --dir packages/plugins/examples/plugin-orchestration-smoke-example run typecheck` - `pnpm --filter @paperclipai/server typecheck` - PR CI on latest head `293fc67c`: `policy`, `verify`, `e2e`, and `security/snyk` all passed. ## Risks - Medium risk: this expands plugin host authority, so route auth, company scoping, and plugin-origin activity attribution need careful review. - Medium risk: database namespace migration behavior must remain idempotent for environments that may have seen earlier branch versions. - Medium risk: the orchestration smoke fixture is intentionally excluded from the root workspace importer to avoid a `pnpm-lock.yaml` PR diff; direct fixture verification remains listed above. - Low operational risk from the PR setup itself: the branch is rebased onto current `master`, the migration is ordered after upstream `0057`/`0058`, and `pnpm-lock.yaml` is not in the final diff. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. Roadmap checked: this work aligns with the completed Plugin system milestone and extends the plugin surface rather than duplicating an unrelated planned core feature. ## Model Used - OpenAI Codex, GPT-5-based coding agent in a tool-enabled CLI environment. Exact hosted model build and context-window size are not exposed by the runtime; reasoning/tool use were enabled for repository inspection, editing, testing, git operations, and PR creation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (N/A: no core UI screen change; example plugin UI contract is covered by tests) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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16b2b84d84
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[codex] Improve agent runtime recovery and governance (#4086)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The heartbeat runtime, agent import path, and agent configuration defaults determine whether work is dispatched safely and predictably. > - Several accumulated fixes all touched agent execution recovery, wake routing, import behavior, and runtime concurrency defaults. > - Those changes need to land together so the heartbeat service and agent creation defaults stay internally consistent. > - This pull request groups the runtime/governance changes from the split branch into one standalone branch. > - The benefit is safer recovery for stranded runs, bounded high-volume reads, imported-agent approval correctness, skill-template support, and a clearer default concurrency policy. ## What Changed - Fixed stranded continuation recovery so successful automatic retries are requeued instead of incorrectly blocking the issue. - Bounded high-volume issue/log reads across issue, heartbeat, agent, project, and workspace paths. - Fixed imported-agent approval and instruction-path permission handling. - Quarantined seeded worktree execution state during worktree provisioning. - Queued approval follow-up wakes and hardened SQL_ASCII heartbeat output handling. - Added reusable agent instruction templates for hiring flows. - Set the default max concurrent agent runs to five and updated related UI/tests/docs. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run server/src/__tests__/company-portability.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/heartbeat-comment-wake-batching.test.ts server/src/__tests__/heartbeat-list.test.ts server/src/__tests__/issues-service.test.ts server/src/__tests__/agent-permissions-routes.test.ts packages/adapter-utils/src/server-utils.test.ts ui/src/lib/new-agent-runtime-config.test.ts` - Split integration check: merged this branch first, followed by the other [PAP-1614](/PAP/issues/PAP-1614) branches, with no merge conflicts. - Confirmed this branch does not include `pnpm-lock.yaml`. ## Risks - Medium risk: touches heartbeat recovery, queueing, and issue list bounds in central runtime paths. - Imported-agent and concurrency default behavior changes may affect existing automation that assumes one-at-a-time default runs. - No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic code-editing/runtime with local shell and GitHub CLI access; exact context window and reasoning mode are not exposed by the Paperclip harness. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d8b63a18e7
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[codex] Add access cleanup and user profile page (#4088)
## Thinking Path > - Paperclip is moving from a solo local operator model toward teams supervising AI-agent companies. > - Human access management and human-visible profile surfaces are part of that multiple-user path. > - The branch included related access cleanup, archived-member removal, permission protection, and a user profile page. > - These changes share company membership, user attribution, and access-service behavior. > - This pull request groups those human access/profile changes into one standalone branch. > - The benefit is safer member removal behavior and a first profile surface for user work, activity, and cost attribution. ## What Changed - Added archived company member removal support across shared contracts, server routes/services, and UI. - Protected company member removal with stricter permission checks and tests. - Added company user profile API, shared types, route wiring, client API, route, and UI page. - Simplified the user profile page visual design to a neutral typography-led layout. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run server/src/__tests__/access-service.test.ts server/src/__tests__/user-profile-routes.test.ts ui/src/pages/CompanyAccess.test.tsx --hookTimeout=30000` - `pnpm exec vitest run server/src/__tests__/user-profile-routes.test.ts --testTimeout=30000 --hookTimeout=30000` after an initial local embedded-Postgres hook timeout in the combined run. - Split integration check: merged after runtime/governance and dev-infra/backups with no merge conflicts. - Confirmed this branch does not include `pnpm-lock.yaml`. ## Risks - Medium risk: changes member removal permissions and adds a new user profile route with cross-table stats. - The profile page is a new UI surface and may need visual follow-up in browser QA. - No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic code-editing/runtime with local shell and GitHub CLI access; exact context window and reasoning mode are not exposed by the Paperclip harness. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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e89d3f7e11
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[codex] Add backup endpoint and dev runtime hardening (#4087)
## Thinking Path > - Paperclip is a local-first control plane for AI-agent companies. > - Operators need predictable local dev behavior, recoverable instance data, and scripts that do not churn the running app. > - Several accumulated changes improve backup streaming, dev-server health, static UI caching/logging, diagnostic-file ignores, and instance isolation. > - These are operational improvements that can land independently from product UI work. > - This pull request groups the dev-infra and backup changes from the split branch into one standalone branch. > - The benefit is safer local operation, easier manual backups, less noisy dev output, and less cross-instance auth leakage. ## What Changed - Added a manual instance database backup endpoint and route tests. - Streamed backup/restore handling to avoid materializing large payloads at once. - Reduced dev static UI log/cache churn and ignored Node diagnostic report captures. - Added guarded dev auto-restart health polling coverage. - Preserved worktree config during provisioning and scoped auth cookies by instance. - Added a Discord daily digest helper script and environment documentation. - Hardened adapter-route and startup feedback export tests around the changed infrastructure. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run packages/db/src/backup-lib.test.ts server/src/__tests__/instance-database-backups-routes.test.ts server/src/__tests__/server-startup-feedback-export.test.ts server/src/__tests__/adapter-routes.test.ts server/src/__tests__/dev-runner-paths.test.ts server/src/__tests__/health-dev-server-token.test.ts server/src/__tests__/http-log-policy.test.ts server/src/__tests__/vite-html-renderer.test.ts server/src/__tests__/workspace-runtime.test.ts server/src/__tests__/better-auth.test.ts` - Split integration check: merged after the runtime/governance branch and before UI branches with no merge conflicts. - Confirmed this branch does not include `pnpm-lock.yaml`. ## Risks - Medium risk: touches server startup, backup streaming, auth cookie naming, dev health checks, and worktree provisioning. - Backup endpoint behavior depends on existing board/admin access controls and database backup helpers. - No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic code-editing/runtime with local shell and GitHub CLI access; exact context window and reasoning mode are not exposed by the Paperclip harness. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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236d11d36f
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[codex] Add run liveness continuations (#4083)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Heartbeat runs are the control-plane record of each agent execution window. > - Long-running local agents can exhaust context or stop while still holding useful next-step state. > - Operators need that stop reason, next action, and continuation path to be durable and visible. > - This pull request adds run liveness metadata, continuation summaries, and UI surfaces for issue run ledgers. > - The benefit is that interrupted or long-running work can resume with clearer context instead of losing the agent's last useful handoff. ## What Changed - Added heartbeat-run liveness fields, continuation attempt tracking, and an idempotent `0058` migration. - Added server services and tests for run liveness, continuation summaries, stop metadata, and activity backfill. - Wired local and HTTP adapters to surface continuation/liveness context through shared adapter utilities. - Added shared constants, validators, and heartbeat types for liveness continuation state. - Added issue-detail UI surfaces for continuation handoffs and the run ledger, with component tests. - Updated agent runtime docs, heartbeat protocol docs, prompt guidance, onboarding assets, and skills instructions to explain continuation behavior. - Addressed Greptile feedback by scoping document evidence by run, excluding system continuation-summary documents from liveness evidence, importing shared liveness types, surfacing hidden ledger run counts, documenting bounded retry behavior, and moving run-ledger liveness backfill off the request path. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/run-continuations.test.ts server/src/__tests__/run-liveness.test.ts server/src/__tests__/activity-service.test.ts server/src/__tests__/documents-service.test.ts server/src/__tests__/issue-continuation-summary.test.ts server/src/services/heartbeat-stop-metadata.test.ts ui/src/components/IssueRunLedger.test.tsx ui/src/components/IssueContinuationHandoff.test.tsx ui/src/components/IssueDocumentsSection.test.tsx` - `pnpm --filter @paperclipai/db build` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts ui/src/components/IssueRunLedger.test.tsx` - `pnpm --filter @paperclipai/ui typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts server/src/__tests__/run-continuations.test.ts ui/src/components/IssueRunLedger.test.tsx` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts -t "treats a plan document update"` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts -t "activity service|treats a plan document update"` - Remote PR checks on head `e53b1a1d`: `verify`, `e2e`, `policy`, and Snyk all passed. - Confirmed `public-gh/master` is an ancestor of this branch after fetching `public-gh master`. - Confirmed `pnpm-lock.yaml` is not included in the branch diff. - Confirmed migration `0058_wealthy_starbolt.sql` is ordered after `0057` and uses `IF NOT EXISTS` guards for repeat application. - Greptile inline review threads are resolved. ## Risks - Medium risk: this touches heartbeat execution, liveness recovery, activity rendering, issue routes, shared contracts, docs, and UI. - Migration risk is mitigated by additive columns/indexes and idempotent guards. - Run-ledger liveness backfill is now asynchronous, so the first ledger response can briefly show historical missing liveness until the background backfill completes. - UI screenshot coverage is not included in this packaging pass; validation is currently through focused component tests. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4, local tool-use coding agent with terminal, git, GitHub connector, GitHub CLI, and Paperclip API access. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Screenshot note: no before/after screenshots were captured in this PR packaging pass; the UI changes are covered by focused component tests listed above. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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b9a80dcf22
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feat: implement multi-user access and invite flows (#3784)
## Thinking Path > - Paperclip is the control plane for autonomous AI companies. > - V1 needs to stay local-first while also supporting shared, authenticated deployments. > - Human operators need real identities, company membership, invite flows, profile surfaces, and company-scoped access controls. > - Agents and operators also need the existing issue, inbox, workspace, approval, and plugin flows to keep working under those authenticated boundaries. > - This branch accumulated the multi-user implementation, follow-up QA fixes, workspace/runtime refinements, invite UX improvements, release-branch conflict resolution, and review hardening. > - This pull request consolidates that branch onto the current `master` branch as a single reviewable PR. > - The benefit is a complete multi-user implementation path with tests and docs carried forward without dropping existing branch work. ## What Changed - Added authenticated human-user access surfaces: auth/session routes, company user directory, profile settings, company access/member management, join requests, and invite management. - Added invite creation, invite landing, onboarding, logo/branding, invite grants, deduped join requests, and authenticated multi-user E2E coverage. - Tightened company-scoped and instance-admin authorization across board, plugin, adapter, access, issue, and workspace routes. - Added profile-image URL validation hardening, avatar preservation on name-only profile updates, and join-request uniqueness migration cleanup for pending human requests. - Added an atomic member role/status/grants update path so Company Access saves no longer leave partially updated permissions. - Improved issue chat, inbox, assignee identity rendering, sidebar/account/company navigation, workspace routing, and execution workspace reuse behavior for multi-user operation. - Added and updated server/UI tests covering auth, invites, membership, issue workspace inheritance, plugin authz, inbox/chat behavior, and multi-user flows. - Merged current `public-gh/master` into this branch, resolved all conflicts, and verified no `pnpm-lock.yaml` change is included in this PR diff. ## Verification - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts ui/src/components/IssueChatThread.test.tsx ui/src/pages/Inbox.test.tsx` - `pnpm run preflight:workspace-links && pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts server/src/__tests__/workspace-runtime-service-authz.test.ts server/src/__tests__/access-validators.test.ts` - `pnpm exec vitest run server/src/__tests__/authz-company-access.test.ts server/src/__tests__/routines-routes.test.ts server/src/__tests__/sidebar-preferences-routes.test.ts server/src/__tests__/approval-routes-idempotency.test.ts server/src/__tests__/openclaw-invite-prompt-route.test.ts server/src/__tests__/agent-cross-tenant-authz-routes.test.ts server/src/__tests__/routines-e2e.test.ts` - `pnpm exec vitest run server/src/__tests__/auth-routes.test.ts ui/src/pages/CompanyAccess.test.tsx` - `pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/db typecheck && pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` - `pnpm db:generate` - `npx playwright test --config tests/e2e/playwright.config.ts --list` - Confirmed branch has no uncommitted changes and is `0` commits behind `public-gh/master` before PR creation. - Confirmed no `pnpm-lock.yaml` change is staged or present in the PR diff. ## Risks - High review surface area: this PR contains the accumulated multi-user branch plus follow-up fixes, so reviewers should focus especially on company-boundary enforcement and authenticated-vs-local deployment behavior. - UI behavior changed across invites, inbox, issue chat, access settings, and sidebar navigation; no browser screenshots are included in this branch-consolidation PR. - Plugin install, upgrade, and lifecycle/config mutations now require instance-admin access, which is intentional but may change expectations for non-admin board users. - A join-request dedupe migration rejects duplicate pending human requests before creating unique indexes; deployments with unusual historical duplicates should review the migration behavior. - Company member role/status/grant saves now use a new combined endpoint; older separate endpoints remain for compatibility. - Full production build was not run locally in this heartbeat; CI should cover the full matrix. ## Model Used - OpenAI Codex coding agent, GPT-5-based model, CLI/tool-use environment. Exact deployed model identifier and context window were not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Note on screenshots: this is a branch-consolidation PR for an already-developed multi-user branch, and no browser screenshots were captured during this heartbeat. --------- Co-authored-by: dotta <dotta@example.com> Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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5f45712846
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Sync/master post pap1497 followups 2026 04 15 (#3779)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The board depends on issue, inbox, cost, and company-skill surfaces to stay accurate and fast while agents are actively working > - The PAP-1497 follow-up branch exposed a few rough edges in those surfaces: stale active-run state on completed issues, missing creator filters, oversized issue payload scans, and placeholder issue-route parsing > - Those gaps make the control plane harder to trust because operators can see misleading run state, miss the right subset of work, or pay extra query/render cost on large issue records > - This pull request tightens those follow-ups across server and UI code, and adds regression coverage for the affected paths > - The benefit is a more reliable issue workflow, safer high-volume cost aggregation, and clearer board/operator navigation ## What Changed - Added the `v2026.415.0` release changelog entry. - Fixed stale issue-run presentation after completion and reused the shared issue-path parser so literal route placeholders no longer become issue links. - Added creator filters to the Issues page and Inbox, including persisted filter-state normalization and regression coverage. - Bounded issue detail/list project-mention scans and trimmed large issue-list payload fields to keep issue reads lighter. - Hardened company-skill list projection and cost/finance aggregation so large markdown blobs and large summed values do not leak into list responses or overflow 32-bit casts. - Added targeted server/UI regression tests for company skills, costs/finance, issue mention scanning, creator filters, inbox normalization, and issue reference parsing. ## Verification - `pnpm exec vitest run server/src/__tests__/company-skills-service.test.ts server/src/__tests__/costs-service.test.ts server/src/__tests__/issues-goal-context-routes.test.ts server/src/__tests__/issues-service.test.ts ui/src/lib/inbox.test.ts ui/src/lib/issue-filters.test.ts ui/src/lib/issue-reference.test.ts` - `gh pr checks 3779` Current pass set on the PR head: `policy`, `verify`, `e2e`, `security/snyk (cryppadotta)`, `Greptile Review` ## Risks - Creator filter options are derived from the currently loaded issue/agent data, so very sparse result sets may not surface every historical creator until they appear in the active dataset. - Cost/finance aggregate casts now use `double precision`; that removes the current overflow risk, but future schema changes should keep large-value aggregation behavior under review. - Issue detail mention scanning now skips comment-body scans on the detail route, so any consumer that relied on comment-only project mentions there would need to fetch them separately. ## Model Used - OpenAI Codex, GPT-5-based coding agent with terminal tool use and local code execution in the Paperclip workspace. Exact internal model ID/context-window exposure is not surfaced in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d4c3899ca4
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[codex] improve issue and routine UI responsiveness (#3744)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Operators rely on issue, inbox, and routine views to understand what the company is doing in real time > - Those views need to stay fast and readable even when issue lists, markdown comments, and run metadata get large > - The current branch had a coherent set of UI and live-update improvements spread across issue search, issue detail rendering, routine affordances, and workspace lookups > - This pull request groups those board-facing changes into one standalone branch that can merge independently of the heartbeat/runtime work > - The benefit is a faster, clearer issue and routine workflow without changing the underlying task model ## What Changed - Show routine execution issues by default and rename the filter to `Hide routine runs` so the default state no longer looks like an active filter. - Show the routine name in the run dialog and tighten the issue properties pane with a workspace link, copy-on-click behavior, and an inline parent arrow. - Reduce issue detail rerenders, keep queued issue chat mounted, improve issues page search responsiveness, and speed up issues first paint. - Add inbox "other search results", refresh visible issue runs after status updates, and optimize workspace lookups through summary-mode execution workspace queries. - Improve markdown wrapping and scrolling behavior for long strings and self-comment code blocks. - Relax the markdown sanitizer assertion so the test still validates safety after the new wrap-friendly inline styles. ## Verification - `pnpm vitest run ui/src/components/IssuesList.test.tsx ui/src/lib/inbox.test.ts ui/src/pages/Issues.test.tsx ui/src/context/BreadcrumbContext.test.tsx ui/src/context/LiveUpdatesProvider.test.ts ui/src/components/MarkdownBody.test.tsx ui/src/api/execution-workspaces.test.ts server/src/__tests__/execution-workspaces-routes.test.ts` ## Risks - This touches several issue-facing UI surfaces at once, so regressions would most likely show up as stale rendering, search result mismatches, or small markdown presentation differences. - The workspace lookup optimization depends on the summary-mode route shape staying aligned between server and UI. ## Model Used - OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment. Exact backend model deployment ID was not exposed in-session. Tool-assisted editing and shell execution were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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7463479fc8
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fix: disable HTTP caching on run log endpoints (#3724)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Every run emits a streaming log that the web UI polls so humans can watch what the agent is doing > - Log responses go out without explicit cache directives, so Express adds an ETag > - If the first poll lands before any bytes have been written, the browser caches the empty / partial snapshot and keeps getting `304 Not Modified` on every subsequent poll > - The transcript pane then stays stuck on "Waiting for transcript…" even after the log has plenty of content > - This pull request sets `Cache-Control: no-cache, no-store` on both run-log endpoints so the conditional-request path is defeated ## What Changed - `server/src/routes/agents.ts` — `GET /heartbeat-runs/:runId/log` now sets `Cache-Control: no-cache, no-store` on the response. - Same change applied to `GET /workspace-operations/:operationId/log` (same structure, same bug). ## Verification - Reproduction: start a long-running agent, watch the transcript pane. Before the fix, open devtools and observe `304 Not Modified` on each poll after the initial 200 with an empty body; the UI never updates. After the fix, each poll is a 200 with fresh bytes. - Existing tests pass. ## Risks Low. Cache headers only affect whether the browser revalidates; the response body is unchanged. No API surface change. ## Model Used Claude Opus 4.6 (1M context), extended thinking mode. ## Checklist - [x] Thinking path traces from project context to this change - [x] Model used specified - [x] Tests run locally and pass - [x] CI green - [x] Greptile review addressed |
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3fa5d25de1
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[codex] harden heartbeat run summaries and recovery context (#3742)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Heartbeat runs are the control-plane record of what agents did, why they woke up, and what operators should see next > - Run lists, stranded issue comments, and live log polling all depend on compact but accurate heartbeat summaries > - The current branch had a focused backend slice that improves how run result JSON is summarized, how stale process recovery comments are written, and how live log polling resolves the active run > - This pull request isolates that heartbeat/runtime reliability work from the unrelated UI and dev-tooling changes > - The benefit is more reliable issue context and cheaper run lookups without dragging unrelated board UI changes into the same review ## What Changed - Include the latest run failure in stranded issue comments during orphaned process recovery. - Bound heartbeat `result_json` payloads for list responses while preserving the raw stored payloads. - Narrow heartbeat log endpoint lookups so issue polling resolves the relevant active run with less unnecessary scanning. - Add focused tests for heartbeat list summaries, live run polling, orphaned process recovery, and the run context/result summary helpers. ## Verification - `pnpm vitest run server/src/__tests__/heartbeat-context-summary.test.ts server/src/__tests__/heartbeat-list.test.ts server/src/__tests__/agent-live-run-routes.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts` ## Risks - The main risk is accidentally hiding a field that some client still expects from summarized `result_json`, or over-constraining the live log lookup path for edge-case run routing. - Recovery comments now surface the latest failure more aggressively, so wording changes may affect downstream expectations if anyone parses those comments too strictly. ## Model Used - OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment. Exact backend model deployment ID was not exposed in-session. Tool-assisted editing and shell execution were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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32a9165ddf
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[codex] harden authenticated routes and issue editor reliability (#3741)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The control plane depends on authenticated routes enforcing company boundaries and role permissions correctly > - This branch also touches the issue detail and markdown editing flows operators use while handling advisory and triage work > - Partial issue cache seeds and fragile rich-editor parsing could leave important issue content missing or blank at the moment an operator needed it > - Blocked issues becoming actionable again should wake their assignee automatically instead of silently staying idle > - This pull request rebases the advisory follow-up branch onto current `master`, hardens authenticated route authorization, and carries the issue-detail/editor reliability fixes forward with regression tests > - The benefit is tighter authz on sensitive routes plus more reliable issue/advisory editing and wakeup behavior on top of the latest base ## What Changed - Hardened authenticated route authorization across agent, activity, approval, access, project, plugin, health, execution-workspace, portability, and related server paths, with new cross-tenant and runtime-authz regression coverage. - Switched issue detail queries from `initialData` to placeholder-based hydration so list/quicklook seeds still refetch full issue bodies. - Normalized advisory-style HTML images before mounting the markdown editor and strengthened fallback behavior when the rich editor silently fails or rejects the content. - Woke assigned agents when blocked issues move back to `todo`, with route coverage for reopen and unblock transitions. - Rebasing note: this branch now sits cleanly on top of the latest `master` tip used for the PR base. ## Verification - `pnpm exec vitest run ui/src/lib/issueDetailQuery.test.tsx ui/src/components/MarkdownEditor.test.tsx server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/activity-routes.test.ts server/src/__tests__/agent-cross-tenant-authz-routes.test.ts` - Confirmed `pnpm-lock.yaml` is not part of the PR diff. - Rebased the branch onto current `public-gh/master` before publishing. ## Risks - Broad authz tightening may expose existing flows that were relying on permissive board or agent access and now need explicit grants. - Markdown editor fallback changes could affect focus or rendering in edge-case content that mixes HTML-like advisory markup with normal markdown. - This verification was intentionally scoped to touched regressions and did not run the full repository suite. ## Model Used - OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment with tool use for terminal, git, and GitHub operations. The exact runtime model identifier is not exposed inside this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, it is behavior-only and does not need before/after screenshots - [x] I have updated relevant documentation to reflect my changes, or no documentation changes were needed for these internal fixes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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50cd76d8a3
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feat(adapters): add capability flags to ServerAdapterModule (#3540)
## Thinking Path > - Paperclip orchestrates AI agents via adapters (`claude_local`, `codex_local`, etc.) > - Each adapter type has different capabilities — instructions bundles, skill materialization, local JWT — but these were gated by 5 hardcoded type lists scattered across server routes and UI components > - External adapter plugins (e.g. a future `opencode_k8s`) cannot add themselves to those hardcoded lists without patching Paperclip source > - The existing `supportsLocalAgentJwt` field on `ServerAdapterModule` proves the right pattern already exists; it just wasn't applied to the other capability gates > - This pull request replaces the 4 remaining hardcoded lists with declarative capability flags on `ServerAdapterModule`, exposed through the adapter listing API > - The benefit is that external adapter plugins can now declare their own capabilities without any changes to Paperclip source code ## What Changed - **`packages/adapter-utils/src/types.ts`** — added optional capability fields to `ServerAdapterModule`: `supportsInstructionsBundle`, `instructionsPathKey`, `requiresMaterializedRuntimeSkills` - **`server/src/routes/agents.ts`** — replaced `DEFAULT_MANAGED_INSTRUCTIONS_ADAPTER_TYPES` and `ADAPTERS_REQUIRING_MATERIALIZED_RUNTIME_SKILLS` hardcoded sets with capability-aware helper functions that fall back to the legacy sets for adapters that don't set flags - **`server/src/routes/adapters.ts`** — `GET /api/adapters` now includes a `capabilities` object per adapter (all four flags + derived `supportsSkills`) - **`server/src/adapters/registry.ts`** — all built-in adapters (`claude_local`, `codex_local`, `process`, `cursor`) now declare flags explicitly - **`ui/src/adapters/use-adapter-capabilities.ts`** — new hook that fetches adapter capabilities from the API - **`ui/src/pages/AgentDetail.tsx`** — replaced hardcoded `isLocal` allowlist with `capabilities.supportsInstructionsBundle` from the API - **`ui/src/components/AgentConfigForm.tsx`** / **`OnboardingWizard.tsx`** — replaced `NONLOCAL_TYPES` denylist with capability-based checks - **`server/src/__tests__/adapter-registry.test.ts`** / **`adapter-routes.test.ts`** — tests covering flag exposure, undefined-when-unset, and per-adapter values - **`docs/adapters/creating-an-adapter.md`** — new "Capability Flags" section documenting all flags and an example for external plugin authors ## Verification - Run `pnpm test --filter=@paperclip/server -- adapter-registry adapter-routes` — all new tests pass - Run `pnpm test --filter=@paperclip/adapter-utils` — existing tests still pass - Spin up dev server, open an agent with `claude_local` type — instructions bundle tab still visible - Create/open an agent with a non-local type — instructions bundle tab still hidden - Call `GET /api/adapters` and verify each adapter includes a `capabilities` object with the correct flags ## Risks - **Low risk overall** — all new flags are optional with backwards-compatible fallbacks to the existing hardcoded sets; no adapter behaviour changes unless a flag is explicitly set - Adapters that do not declare flags continue to use the legacy lists, so there is no regression risk for built-in adapters - The UI capability hook adds one API call to AgentDetail mount; this is a pre-existing endpoint, so no new latency path is introduced ## Model Used - Provider: Anthropic - Model: Claude Sonnet 4.6 (`claude-sonnet-4-6`) - Context: 200k token context window - Mode: Agentic tool use (code editing, bash, grep, file reads) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Pawla Abdul (Bot) <pawla@groombook.dev> Co-authored-by: Paperclip <noreply@paperclip.ing> |
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213bcd8c7a
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fix: include routine-execution issues in agent inbox-lite (#3329)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents query their own inbox via `/agents/me/inbox-lite` to discover assigned work > - `issuesSvc.list()` excludes `routine_execution` issues by default, which is appropriate for the board UI > - But agents calling `inbox-lite` need to see **all** their assigned work, including routine-created issues > - Without `includeRoutineExecutions: true`, agents miss their own in-progress issues after the first delegation step > - This causes routine-driven pipelines to stall — agents report "Inbox empty" and exit > - This pull request adds `includeRoutineExecutions: true` to the `inbox-lite` query > - The benefit is routine-driven pipelines no longer stall after delegation ## What Changed - Added `includeRoutineExecutions: true` to the `issuesSvc.list()` call in the `/agents/me/inbox-lite` route (`server/src/routes/agents.ts`) ## Verification 1. Create a routine that assigns an issue to an agent 2. Trigger the routine — first run works via `issue_assigned` event injection 3. Agent delegates (creates a subtask) and exits 4. On next heartbeat, agent queries `inbox-lite` 5. **Before fix**: issue is invisible, agent reports "Inbox empty" 6. **After fix**: issue appears in inbox, agent continues working Tested on production instance — fix resolves the stall immediately. ## Risks Low risk — additive change, only affects agent-facing inbox endpoint. Board UI keeps its default behavior (routine executions hidden for clean view). ## Model Used Claude Opus 4.6 (`claude-opus-4-6`) via Claude Code CLI — high thinking effort, tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Closes #3282 |
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7f893ac4ec
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[codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Reliable execution depends on heartbeat routing, issue lifecycle semantics, telemetry, and a fast enough local verification loop to keep regressions visible > - The remaining commits on this branch were mostly server/runtime correctness fixes plus test and documentation follow-ups in that area > - Those changes are logically separate from the UI-focused issue-detail and workspace/navigation branches even when they touch overlapping issue APIs > - This pull request groups the execution reliability, heartbeat, telemetry, and tooling changes into one standalone branch > - The benefit is a focused review of the control-plane correctness work, including the follow-up fix that restored the implicit comment-reopen helpers after branch splitting ## What Changed - Hardened issue/heartbeat execution behavior, including self-review stage skipping, deferred mention wakes during active execution, stranded execution recovery, active-run scoping, assignee resolution, and blocked-to-todo wake resumption - Reduced noisy polling/logging overhead by trimming issue run payloads, compacting persisted run logs, silencing high-volume request logs, and capping heartbeat-run queries in dashboard/inbox surfaces - Expanded telemetry and status semantics with adapter/model fields on task completion plus clearer status guidance in docs/onboarding material - Updated test infrastructure and verification defaults with faster route-test module isolation, cheaper default `pnpm test`, e2e isolation from local state, and repo verification follow-ups - Included docs/release housekeeping from the branch and added a small follow-up commit restoring the implicit comment-reopen helpers that were dropped during branch reconstruction ## Verification - `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-telemetry-routes.test.ts` - `pnpm vitest run server/src/__tests__/http-log-policy.test.ts server/src/__tests__/heartbeat-run-log.test.ts server/src/__tests__/health.test.ts` - `server/src/__tests__/activity-service.test.ts`, `server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and `server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted on this host but the embedded Postgres harness reported init-script/data-dir problems and skipped or failed to start, so they are noted as environment-limited ## Risks - Medium: this branch changes core issue/heartbeat routing and reopen/wakeup behavior, so regressions would affect agent execution flow rather than isolated UI polish - Because it also updates verification infrastructure, reviewers should pay attention to whether the new tests are asserting the right failure modes and not just reshaping harness behavior ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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e89076148a
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[codex] Improve workspace runtime and navigation ergonomics (#3680)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - That operator experience depends not just on issue chat, but also on how workspaces, inbox groups, and navigation state behave over long-running sessions > - The current branch included a separate cluster of workspace-runtime controls, inbox grouping, sidebar ordering, and worktree lifecycle fixes > - Those changes cross server, shared contracts, database state, and UI navigation, but they still form one coherent operator workflow area > - This pull request isolates the workspace/runtime and navigation ergonomics work into one standalone branch > - The benefit is better workspace recovery and navigation persistence without forcing reviewers through the unrelated issue-detail/chat work ## What Changed - Improved execution workspace and project workspace controls, request wiring, layout, and JSON editor ergonomics - Hardened linked worktree reuse/startup behavior and documented the `worktree repair` flow for recovering linked worktrees safely - Added inbox workspace grouping, mobile collapse, archive undo, keyboard navigation, shared group-header styling, and persisted collapsed-group behavior - Added persistent sidebar order preferences with the supporting DB migration, shared/server contracts, routes, services, hooks, and UI integration - Scoped issue-list preferences by context and added targeted UI/server tests for workspace controls, inbox behavior, sidebar preferences, and worktree validation ## Verification - `pnpm vitest run server/src/__tests__/sidebar-preferences-routes.test.ts ui/src/pages/Inbox.test.tsx ui/src/components/ProjectWorkspaceSummaryCard.test.tsx ui/src/components/WorkspaceRuntimeControls.test.tsx ui/src/api/workspace-runtime-control.test.ts` - `server/src/__tests__/workspace-runtime.test.ts` was attempted, but the embedded Postgres suite self-skipped/hung on this host after reporting an init-script issue, so it is not counted as a local pass here ## Risks - Medium: this branch includes migration-backed preference storage plus worktree/runtime behavior, so merge review should pay attention to state persistence and worktree recovery semantics - The sidebar preference migration is standalone, but it should still be watched for conflicts if another migration lands first ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6e6f538630
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[codex] Improve issue detail and issue-list UX (#3678)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - A core part of that is the operator experience around reading issue state, agent chat, and sub-task structure > - The current branch had a long run of issue-detail and issue-list UX fixes that all improve how humans follow and steer active work > - Those changes mostly live in the UI/chat surface and should be reviewed together instead of mixed with workspace/runtime work > - This pull request packages the issue-detail, chat, markdown, and sub-issue list improvements into one standalone change > - The benefit is a cleaner, less jumpy, more reliable issue workflow on desktop and mobile without coupling it to unrelated server/runtime refactors ## What Changed - Stabilized issue chat runtime wiring, optimistic comment handling, queued-comment cancellation, and composer anchoring during live updates - Fixed several issue-detail rendering and navigation regressions including placeholder bleed, local polling scope, mobile inbox-to-issue transitions, and visible refresh resets - Improved markdown and rich-content handling with advisory image normalization, editor fallback behavior, touch mention recovery, and `issue:` quicklook links - Refined sub-issue behavior with parent-derived defaults, current-user inheritance fixes, empty-state cleanup, and a reusable issue-list presentation for sub-issues - Added targeted UI tests for the new issue-detail, chat scroll/message, placeholder-data, markdown, and issue-list behaviors ## Verification - `pnpm vitest run ui/src/components/IssueChatThread.test.tsx ui/src/components/MarkdownEditor.test.tsx ui/src/components/IssuesList.test.tsx ui/src/context/LiveUpdatesProvider.test.tsx ui/src/lib/issue-chat-messages.test.ts ui/src/lib/issue-chat-scroll.test.ts ui/src/lib/issue-detail-subissues.test.ts ui/src/lib/query-placeholder-data.test.tsx ui/src/hooks/usePaperclipIssueRuntime.test.tsx` ## Risks - Medium: this branch touches the highest-traffic issue-detail UI paths, so regressions would show up as chat/thread or sub-issue UX glitches - The changes are UI-heavy and would benefit from reviewer screenshots or a quick manual browser pass before merge ## Model Used - OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact deployed model ID is not exposed in this environment), reasoning enabled, tool use and local code execution enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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2a84e53c1b |
Introduce bind presets for deployment setup
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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c566a9236c | fix: harden heartbeat and adapter runtime workflows | ||
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ac664df8e4
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fix(authz): scope import, approvals, activity, and heartbeat routes (#3315)
## Thinking Path > - Paperclip orchestrates AI agents and company-scoped control-plane actions for zero-human companies. > - This change touches the server authz boundary around company portability, approvals, activity, and heartbeat-run operations. > - The vulnerability was that board-authenticated callers could cross company boundaries or create new companies through import paths without the same authorization checks enforced elsewhere. > - Once that gap existed, an attacker could chain it into higher-impact behavior through agent execution paths. > - The fix needed to harden every confirmed authorization gap in the reported chain, not just the first route that exposed it. > - This pull request adds the missing instance-admin and company-access checks and adds regression tests for each affected route. > - The benefit is that cross-company actions and new-company import flows now follow the same control-plane authorization rules as the rest of the product. ## What Changed - Required instance-admin access for `new_company` import preview/apply flows in `server/src/routes/companies.ts`. - Required company access before approval decision routes in `server/src/routes/approvals.ts`. - Required company access for activity creation and heartbeat-run issue listing in `server/src/routes/activity.ts`. - Required company access before heartbeat cancellation in `server/src/routes/agents.ts`. - Added regression coverage in the corresponding server route tests. ## Verification - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/company-portability-routes.test.ts src/__tests__/approval-routes-idempotency.test.ts src/__tests__/activity-routes.test.ts src/__tests__/agent-permissions-routes.test.ts` - `pnpm --filter @paperclipai/server typecheck` - Prior verification on the original security patch branch also included `pnpm build`. ## Risks - Low code risk: the change is narrow and only adds missing authorization gates to existing routes. - Operational risk: the advisory is already public, so this PR should be merged quickly to minimize the public unpatched window. - Residual product risk remains around open signup / bootstrap defaults, which was intentionally left out of this patch because the current first-user onboarding flow depends on it. ## Model Used - OpenAI GPT-5 Codex coding agent with tool use and local code execution in the Codex CLI environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Forgotten <forgottenrunes@protonmail.com> |
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0e87fdbe35
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Merge pull request #3222 from paperclipai/pap-1266-issue-workflow
feat(issue-ui): refine issue workflow surfaces and live updates |
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03dff1a29a | Refine issue workflow surfaces and live updates | ||
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5d021583be | Add draft routine defaults and run-time overrides | ||
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61ed4ef90c | fix(server): reject non-participant stage mutations | ||
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3baebee2df | Track blocker and review activity events | ||
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ec75cabcd8 | Enforce execution-policy stage handoffs | ||
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844b061267 | Disable timer heartbeats by default for new agents | ||
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5640d29ab0 | Persist non-issue inbox dismissals | ||
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9cfa37fce3
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Merge pull request #1961 from antonio-mello-ai/fix/webhook-github-sentry-signing-modes
feat(server): add github_hmac and none webhook signing modes |
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bce58d353d | fix execution policy decision persistence | ||
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b3e0c31239 |
Add issue review policy and comment retry
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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2c2e13eac2 | merge master into pap-1167-app-ui-bundle | ||
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5136381d8f | Speed up issue search | ||
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e9c8bd4805 |
Allow arbitrary issue attachments
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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8f23270f35 |
Add project-level environment variables
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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08fea10ce1
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Merge pull request #2772 from paperclipai/PAPA-46-why-did-this-issue-succeed-without-following-my-instructions
fix: enable agent re-checkout of in_review tasks on comment feedback |
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cd19834fab |
feat(server): add github_hmac and none webhook signing modes
Adds two new webhook trigger signing modes for external provider compatibility: - github_hmac: accepts X-Hub-Signature-256 header with HMAC-SHA256(secret, rawBody), no timestamp prefix. Compatible with GitHub, Sentry, and services following the same standard. - none: no authentication; the 24-char hex publicId in the URL acts as the shared secret. For services that cannot add auth headers. The replay window UI field is hidden when these modes are selected since neither uses timestamp-based replay protection. Closes #1892 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |