paperclip/server/src/services
Dotta 16b2b84d84
[codex] Improve agent runtime recovery and governance (#4086)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - The heartbeat runtime, agent import path, and agent configuration
defaults determine whether work is dispatched safely and predictably.
> - Several accumulated fixes all touched agent execution recovery, wake
routing, import behavior, and runtime concurrency defaults.
> - Those changes need to land together so the heartbeat service and
agent creation defaults stay internally consistent.
> - This pull request groups the runtime/governance changes from the
split branch into one standalone branch.
> - The benefit is safer recovery for stranded runs, bounded high-volume
reads, imported-agent approval correctness, skill-template support, and
a clearer default concurrency policy.

## What Changed

- Fixed stranded continuation recovery so successful automatic retries
are requeued instead of incorrectly blocking the issue.
- Bounded high-volume issue/log reads across issue, heartbeat, agent,
project, and workspace paths.
- Fixed imported-agent approval and instruction-path permission
handling.
- Quarantined seeded worktree execution state during worktree
provisioning.
- Queued approval follow-up wakes and hardened SQL_ASCII heartbeat
output handling.
- Added reusable agent instruction templates for hiring flows.
- Set the default max concurrent agent runs to five and updated related
UI/tests/docs.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run server/src/__tests__/company-portability.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-comment-wake-batching.test.ts
server/src/__tests__/heartbeat-list.test.ts
server/src/__tests__/issues-service.test.ts
server/src/__tests__/agent-permissions-routes.test.ts
packages/adapter-utils/src/server-utils.test.ts
ui/src/lib/new-agent-runtime-config.test.ts`
- Split integration check: merged this branch first, followed by the
other [PAP-1614](/PAP/issues/PAP-1614) branches, with no merge
conflicts.
- Confirmed this branch does not include `pnpm-lock.yaml`.

## Risks

- Medium risk: touches heartbeat recovery, queueing, and issue list
bounds in central runtime paths.
- Imported-agent and concurrency default behavior changes may affect
existing automation that assumes one-at-a-time default runs.
- No database migrations are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic
code-editing/runtime with local shell and GitHub CLI access; exact
context window and reasoning mode are not exposed by the Paperclip
harness.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-04-20 06:19:48 -05:00
..
access.ts [codex] Add access cleanup and user profile page (#4088) 2026-04-20 06:10:20 -05:00
activity-log.ts Add username log censor setting 2026-03-20 08:50:00 -05:00
activity.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
adapter-plugin-store.ts feat(adapters): external adapter plugin system with dynamic UI parser 2026-04-03 21:11:20 +01:00
agent-instructions.ts chore: mark bootstrapPromptTemplate as deprecated 2026-03-26 11:12:25 -05:00
agent-permissions.ts Implement agent hiring, approval workflows, config revisions, LLM reflection, and sidebar badges 2026-02-19 13:02:41 -06:00
agents.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
approvals.ts Add username log censor setting 2026-03-20 08:50:00 -05:00
assets.ts refactor: rename packages to @paperclipai and CLI binary to paperclipai 2026-03-03 08:45:26 -06:00
board-auth.ts feat: implement multi-user access and invite flows (#3784) 2026-04-17 09:44:19 -05:00
budgets.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
companies.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
company-export-readme.ts fix: link Agent Company to agentcompanies.io in export README 2026-03-20 08:06:04 -05:00
company-member-roles.ts feat: implement multi-user access and invite flows (#3784) 2026-04-17 09:44:19 -05:00
company-portability.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
company-skills.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
costs.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
cron.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
dashboard.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
default-agent-instructions.ts Add default agent instructions bundle 2026-03-20 07:42:36 -05:00
documents.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
execution-workspace-policy.ts fix: address latest Greptile runtime review 2026-03-23 19:43:50 -05:00
execution-workspaces.ts [codex] improve issue and routine UI responsiveness (#3744) 2026-04-15 15:54:05 -05:00
feedback-redaction.ts Add feedback voting and thumbs capture flow 2026-04-02 09:11:49 -05:00
feedback-share-client.ts Restore feedback trace export fixes 2026-04-03 15:59:42 -05:00
feedback.ts Restore feedback trace export fixes 2026-04-03 15:59:42 -05:00
finance.ts Sync/master post pap1497 followups 2026 04 15 (#3779) 2026-04-15 21:13:56 -05:00
github-fetch.ts fix: harden GHE URL detection and extract shared GitHub helpers 2026-04-01 21:05:48 +00:00
goals.ts Improve onboarding defaults and issue goal fallback 2026-03-12 08:50:31 -05:00
heartbeat-run-summary.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
heartbeat-stop-metadata.test.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
heartbeat-stop-metadata.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
heartbeat.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
hire-hook.ts fix(adapters): honor paused overrides and isolate UI parser state 2026-04-04 14:04:33 -05:00
inbox-dismissals.ts Persist non-issue inbox dismissals 2026-04-09 06:16:05 -05:00
index.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
instance-settings.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
invite-grants.ts feat: implement multi-user access and invite flows (#3784) 2026-04-17 09:44:19 -05:00
issue-approvals.ts refactor: rename packages to @paperclipai and CLI binary to paperclipai 2026-03-03 08:45:26 -06:00
issue-assignment-wakeup.ts fix: close remaining routine merge blockers 2026-03-20 16:40:27 -05:00
issue-continuation-summary.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
issue-execution-policy.ts [codex] Harden execution reliability and heartbeat tooling (#3679) 2026-04-14 13:34:52 -05:00
issue-goal-fallback.ts Seed onboarding project and issue goal context 2026-03-24 11:48:59 -05:00
issues.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
live-events.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
local-service-supervisor.ts fix: harden heartbeat and adapter runtime workflows 2026-04-10 22:26:21 -05:00
plugin-capability-validator.ts Add plugin telemetry bridge capability 2026-04-02 10:47:29 -05:00
plugin-config-validator.ts Refactor secret-ref format registration to use a UI hint for Paperclip secret UUIDs 2026-03-14 15:43:56 -07:00
plugin-dev-watcher.ts Tighten plugin dev file watching 2026-03-14 12:07:04 -05:00
plugin-event-bus.ts Simplify plugin runtime and cleanup lifecycle 2026-03-13 16:58:29 -05:00
plugin-host-service-cleanup.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-host-services.ts feat(adapters): external adapter plugin system with dynamic UI parser 2026-04-03 21:11:20 +01:00
plugin-job-coordinator.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-job-scheduler.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-job-store.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-lifecycle.ts Simplify plugin runtime and cleanup lifecycle 2026-03-13 16:58:29 -05:00
plugin-loader.ts Enhance plugin loading and toolbar integration 2026-03-14 15:27:45 -07:00
plugin-log-retention.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-manifest-validator.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-registry.ts Simplify plugin runtime and cleanup lifecycle 2026-03-13 16:58:29 -05:00
plugin-runtime-sandbox.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-secrets-handler.ts Simplify plugin runtime and cleanup lifecycle 2026-03-13 16:58:29 -05:00
plugin-state-store.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-stream-bus.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-tool-dispatcher.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-tool-registry.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
plugin-worker-manager.ts Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00
project-workspace-runtime-config.ts [codex] Improve workspace runtime and navigation ergonomics (#3680) 2026-04-14 12:57:11 -05:00
projects.ts Fix workspace runtime state reconciliation 2026-04-04 17:48:54 -05:00
quota-windows.ts feat(costs): add billing, quota, and budget control plane 2026-03-16 15:11:01 -05:00
routines.ts fix(routines): include cronExpression and timezone in list trigger response (#3209) 2026-04-15 06:42:24 -05:00
run-continuations.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
run-liveness.ts [codex] Add run liveness continuations (#4083) 2026-04-20 06:01:49 -05:00
run-log-store.ts fix(server): use home-based path for run logs instead of cwd 2026-03-07 16:18:14 -08:00
secrets.ts Add project-level environment variables 2026-04-06 21:23:30 -05:00
sidebar-badges.ts Persist non-issue inbox dismissals 2026-04-09 06:16:05 -05:00
sidebar-preferences.ts [codex] Improve workspace runtime and navigation ergonomics (#3680) 2026-04-14 12:57:11 -05:00
work-products.ts Address remaining Greptile workspace review 2026-03-17 10:12:44 -05:00
workspace-operation-log-store.ts Add workspace operation tracking and fix project properties JSX 2026-03-17 09:36:35 -05:00
workspace-operations.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00
workspace-runtime-read-model.ts Fix workspace runtime state reconciliation 2026-04-04 17:48:54 -05:00
workspace-runtime.ts [codex] Improve agent runtime recovery and governance (#4086) 2026-04-20 06:19:48 -05:00